Improving metabolic flux predictions using absolute gene expression data (Q34309177)

1 August 2017

title

Improving metabolic flux predictions using absolute gene expression data (English)

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1 August 2017

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6

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7

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3

Warwick B Dunn

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1 August 2017

Kieran Smallbone

2

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Neil Swainston

series ordinal

8

object named as

Neil Swainston

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1 August 2017

Dave Lee

1

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1 August 2017

Ettore Murabito

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4

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1 August 2017

Catherine L Winder

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5

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1 August 2017

publication date

19 June 2012

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1 August 2017

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1 August 2017

volume

6

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1 August 2017

page(s)

73

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Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

1 August 2017

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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The biomass objective function

6 July 2018

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What is flux balance analysis?

6 July 2018

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A protocol for generating a high-quality genome-scale metabolic reconstruction

6 July 2018

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6 July 2018

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Estimating accuracy of RNA-Seq and microarrays with proteomics

6 July 2018

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GrowMatch: an automated method for reconciling in silico/in vivo growth predictions

6 July 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

6 July 2018

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RNA-Seq: a revolutionary tool for transcriptomics

6 July 2018

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A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

6 July 2018

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6 July 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

6 July 2018

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Context-specific metabolic networks are consistent with experiments

6 July 2018

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Predicting biological system objectives de novo from internal state measurements

6 July 2018

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Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli

6 July 2018

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Global reconstruction of the human metabolic network based on genomic and bibliomic data

6 July 2018

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Integration of metabolome data with metabolic networks reveals reporter reactions

6 July 2018

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Metabolic footprinting and systems biology: the medium is the message

6 July 2018

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The 'evolvability' of promiscuous protein functions

6 July 2018

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Genome-scale models of microbial cells: evaluating the consequences of constraints

6 July 2018

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Metabolic pathway analysis of yeast strengthens the bridge between transcriptomics and metabolic networks

6 July 2018

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6 July 2018

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The effects of alternate optimal solutions in constraint-based genome-scale metabolic models

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks

6 July 2018

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Correlation between protein and mRNA abundance in yeast

6 July 2018

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Oscillatory, stochastic and chaotic growth rate fluctuations in permittistatically controlled yeast cultures

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477026

Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477026

Thermodynamic efficiency of microbial growth is low but optimal for maximal growth rate

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3477026

Stoichiometric model of Escherichia coli metabolism: incorporation of growth-rate dependent biomass composition and mechanistic energy requirements

6 July 2018

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Optimization-based framework for inferring and testing hypothesized metabolic objective functions

21 January 2018

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https://api.crossref.org/works/10.1186%2F1752-0509-6-73

Capturing the essence of a metabolic network: a flux balance analysis approach

21 January 2018

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Flux balance analysis: a geometric perspective

21 January 2018

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High-throughput classification of yeast mutants for functional genomics using metabolic footprinting.

21 January 2018

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Is maximization of molar yield in metabolic networks favoured by evolution?

21 January 2018

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Network-based prediction of human tissue-specific metabolism

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22713172

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1752-0509-6-73

1 reference

journals/bmcsb/LeeSDMWKMS12

1 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

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1 August 2017

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