GENOM 2005
Microarray analysis for Affymetrix arrays
Feature rich and user friendly application for analysing array-experiments (e.g. from provider Affymetrix). It includes additional gene information, multiple analysis methods, automatic pathway mapping with an editor, function prediction...
Microarray DNA Analysis
Genom 2005 presents the data in different colors for each signal. You have a quick overview of the data. A gene name and an accession number for each probeset is presented in each row.
Gene Expression Graph
This is a diagram with one array. It shows a bar for each probeset.
3D View
You can display each signal on your array in a 3D view. When comparing it with another array, you can easily find interesting probesets. You can also sort the signals by gene function or gene location.
Chromosome Location
This view displays all probesets orders by their location on the chromosome.
Gene Expression Process
This screenshot shows a graph where every probeset is represented by a line. It shows the up/down regulation of a gene between different time.
Pathway View
This screenshot shows a loaded pathway which is directly combined with the array data you have loaded.
Pathway Editor
With this integrated map editor, you can easily create new pathways or edit an existing one.
Gene Function Prediction
Often you have no information about a probeset because it's an EST or it has not been analyzed before. With this module you can get new information from probesets or custom sequences over a BLAST search (online). Possible new gene functions will then be shown.
Function Prediction Details
Details about the function prediction.
PubMED Research
PubMED is the largest database in the world with medical articles (hosted on Ncbi website). This module searches that database and returns relevant results to the entered term (or gene).
MeSH Research
MeSH (Medical Subject Headings) provides ordered terms to improve PubMED searches for example.
Gene Network
The relationship of the genes described in the abstracts from PubMED are shown here as relationship diagram.
Gene functions for Microarray
This algorithm presents the data in a table with all the gene functions from the genes you previously filtered or can be done for the whole array.
GeneOntology for an Array
This displays the gene functions in a GeneOntology like view.
Probeset Information
The gene information dialog. Here you get more detail information from the searched query like sequence, description and more.
Probeset Details
In this screenshot, you can directly access the links for more information about your query. Unlike in other programs you can click on a link and directly access the result page without filling out web forms.
Functions for Probeset
Another GeneOntology graph of the gene functions from the gene.
Internet Research
In this screenshot you can see direct links for more information about your query. Unlike in other programs you can click on a link and get directly to the result page without filling out web forms.
Cluster View
This cluster can be made easily. It shows the most equal values paired together in a graph.
Scatterplot
Another view from the cluster algorithm.
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