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Clonal morphology-guided combination therapies overcome heterogeneity-driven drug tolerance

View ORCID ProfileXiaoxi Li, Ling Liu, Yuanyuan Yan, Mengfang Yang, Lingli Luo, Yong Jiang, Weijun Ren
doi: https://doi.org/10.64898/2026.01.31.703021
Xiaoxi Li
Jiangsu University
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  • For correspondence: lixiaoxi{at}ujs.edu.cn
Ling Liu
Jiangsu University
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Yuanyuan Yan
Jiangsu University
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Mengfang Yang
Jiangsu University
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Lingli Luo
Jiangsu University
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Yong Jiang
Jiangsu University
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Weijun Ren
Jiangsu University
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Abstract

Tumor heterogeneity plays a critical role in tumor relapse and the development of drug resistance. Current personalized strategies, based on genetic profiling or bulk tumor drug sensitivity testing, offer limited clinical value as they overlook clonal heterogeneity. Here, through establishing primary tumor cell cultures from multiple metastatic sites, we observed that tumor cells exhibit high morphological plasticity and readily form distinct clonal morphologies during monoclonal expansion. Moreover, these heterogeneous clones displayed distinct tumorigenic and histological traits in orthotopic models, which may imply their differing clinical relevance in tumor progression. We also found that clonal morphological heterogeneity was exhibited by both established cell lines and primary lines derived from chemically induced tumor models. Subsequently, we analyzed the drug sensitivity profiles of tumor clones and identified clone-specific sensitive drugs. Despite limited in vitro synergy in pairwise combinations, both in vitro and in vivo assays confirmed their potent, clone-selective inhibition, suggesting rational drug combinations can precisely target distinct clonal populations. Taken together, Collectively, our findings propose that a heterogeneity-informed drug selection paradigm, enabled by rapid clonal morphology analysis of patient-derived cells, can be used to prevent recurrence and overcome resistance.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted February 03, 2026.
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Clonal morphology-guided combination therapies overcome heterogeneity-driven drug tolerance
Xiaoxi Li, Ling Liu, Yuanyuan Yan, Mengfang Yang, Lingli Luo, Yong Jiang, Weijun Ren
bioRxiv 2026.01.31.703021; doi: https://doi.org/10.64898/2026.01.31.703021
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Clonal morphology-guided combination therapies overcome heterogeneity-driven drug tolerance
Xiaoxi Li, Ling Liu, Yuanyuan Yan, Mengfang Yang, Lingli Luo, Yong Jiang, Weijun Ren
bioRxiv 2026.01.31.703021; doi: https://doi.org/10.64898/2026.01.31.703021

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