Is there a way to preserve the order of the columns in a csv file when read and the write with Python Pandas? For example, in this code
import pandas as pd
data = pd.read_csv(filename)
data.to_csv(filename)
the output files might be different because the columns are not preserved.
There appears to be a bug in the current version of Pandas ('0.11.0'), which means that Matti John's answer will not work. If you specify columns for writing to file, they are written in alphabetical order, but simply relabelled according to the list in cols. For example, this code:
import pandas
dfdict={}
dfdict["a"]=[1,2,3,4]
dfdict["b"]=[5,6,7,8]
dfdict["c"]=[9,10,11,12]
df=pandas.DataFrame(dfdict)
df.to_csv("dfTest.txt","\t",header=True,cols=["b","a","c"])
results in this (incorrect) output:
b a c
0 1 5 9
1 2 6 10
2 3 7 11
3 4 8 12
You can check which version of pandas you have installed by executing:
pandas.version.version
Documentation for to_csv is here
Actually, it seems that this is a known bug and will be fixed in an upcoming release (0.11.1):
https://github.com/pydata/pandas/issues/3489
UPDATE: There still hasn't been a new release of pandas, but there is a workaround described here, which doesn't require using a different version of pandas:
github.com/pydata/pandas/issues/3454
So changing the last line in the block of code above to the following will work correctly:
df.to_csv("dfTest.txt","\t",header=True,cols=["b","a","c"], engine='python')
UPDATE it seems that the argument "cols" has been renamed to "columns" and that the argument "engine" is deprecated (no longer available) in recent versions of pandas. Also, this bug is fixed in version 0.19.0.
TypeError: to_csv() got an unexpected keyword argument 'cols' did the API change?
columns. Changing cols to columns works for me now.
The column order should generally be preserved when reading and then writing a csv file like that, but if for some reason they are not in the order you want you can use the columns keyword argument in to_csv.
For example, if you have a csv with columns a, b, c, d:
data = pd.read_csv(filename)
data.to_csv(filename, columns=['a', 'b', 'c', 'd'])
Another workaround is to do this:
import pandas as pd
data = pd.read_csv(filename)
data2 = df[['A','B','C']] #put 'A' 'B' 'C' in the desired order
data2.to_csv(filename)
... you can easily specify them by reading the first line of your CSV file which contains headers, then converting the colnames to a list, and - as others pointed out - using that the list in read_csv():
path_to_table = 'path/to/table.csv'
# read the columns in the order as in CSV:
with open(path_to_table) as f:
first_line = f.readline()
cols = first_line.strip().split(',')
# use it:
df = pd.read_csv(path_to_table, names=cols, header=0)[cols]
