CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework
PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
Single cell classification and feature engineering using DREMI scores
Describe immune reconstitution in Multiple Sclerosis using mass cytometry data
Multi-modal integration of single-cell and spatial proteomics data
Single_cell_Sequencing_Oncology
Workflows for sc/snRNAseq from count data.
End-to-end spatial transcriptomics pipeline for 10x Genomics Visium human brain glioblastoma — cell type annotation, GBM subtype characterization, and spatial neighborhood analysis
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