Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized.
Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized using common, reusable programming components.
Diallel analysis of carrot phenotypes
Biollante: A Tool to Identify Contamination in Plant Genomic Datasets
Quality Evaluation of Core Collections
Analysis of wheat and barley historical data from 9 AGENT genebanks.
An R package that helps biologists resolve the metadata landscape of public sequencing archives through species-level summaries and visuals.
Discover Probable Duplicates in Plant Genetic Resources Collections
Phylogeny and classification of Azolla filiculoides MYB genes
Introduction to GBS data analysis to MSc students from Halle University in February 2024
Training material for the use of Germinate
Phylogenetic tree of LAR and other PIP family enzymes as shown in Güngör et al. 2020. This repository details all code and intermediate files used.
Constitution of Core Collections by Principal Component Scoring Strategy
Constitution of Core Collections using Length of Encoded Attribute Values
Sampling Strategies for Constructing Core Collections
Germinate Gatekeeper
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