C library for high-throughput sequencing data formats

a pytorch lib with state-of-the-art architectures, pretrained models and real-time updated results

Tools for working with SAM/BAM data

A Java API for high-throughput sequencing data (HTS) formats.

Syntax highlighting for computational biology

Randomly subsample sequencing reads or alignments

Win 10/11 related research

Dashboard composition tooling based on the Uberfire framework

viral-ngs: command line tools and wrappers for processing raw viral genomic data

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.

Learning the Sequence Alignment/Map format

Creating alignment plots from bam files

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

A DNA Sequence Alignment/Map (SAM) library for Clojure

https://bamtech.gitbooks.io/dev-standards/

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

Simple pure Python SAM parser and objects for working with SAM records

Frequently used commands in bioinformatics

useful command-line tools written to showcase hts-nim