ballgown

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Quantification and Visualization of Variations of Splicing in Population

visualization rna-seq statistics alternative-splicing ballgown splicing sqtl 3s-scores

snakemake files of the tuxedo v2 pipeline from Pertea et al 2016

rna-seq snakemake r conda expression rnaseq hisat2 samtools conda-environment differential stringtie tuxedo2 ballgown rskittlebrewer smsk

Attempt at snakemake pipeline. Pyflow was forked from https://github.com/crazyhottom but the Snakefile infrastructure and rule calling was inspired by https://github.com/snakemake-workflows

snakemake pipeline star slurm-cluster htseq-count stringtie ballgown fastqs

hisat2 stringtie ballgown noiseq new-tuxedo-protocol

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