@@ -61,33 +61,32 @@ jobs:
6161 - uses : actions/checkout@v2
6262 - uses : psf/black@stable
6363
64- coverage :
64+ conda-dev-test :
65+ name : Conda Setup & Code Coverage
6566 runs-on : ubuntu-latest
67+ defaults :
68+ # Steps that rely on the activated environment must be run with this shell setup.
69+ # See https://github.com/marketplace/actions/setup-miniconda#important
70+ run :
71+ shell : bash -l {0}
6672 steps :
6773 - uses : actions/checkout@v2
6874 - uses : conda-incubator/setup-miniconda@v2
6975 with :
76+ # Create env with dev packages
7077 auto-update-conda : true
71- python-version : ${{ matrix.python-version }}
72- - name : Add conda to system path
78+ python-version : 3.9
79+ environment-file : dev-environment.yml
80+ # Activate imglyb-dev environment
81+ activate-environment : imglyb-dev
82+ auto-activate-base : false
83+ # Use mamba for faster setup
84+ use-mamba : true
85+ mamba-version : " *"
86+ - name : Test imglyb
7387 run : |
74- # $CONDA is an environment variable pointing to the root of the miniconda directory
75- echo $CONDA/bin >> $GITHUB_PATH
76- name : Install mamba
77- run : |
78- conda install -c conda-forge mamba
79- name : Install dependencies
80- run : |
81- mamba env update --file dev-environment.yml --name base
82- name : Install current project in dev mode
83- run : |
84- pip install -e .
85- name : Install pytest
86- run : |
87- mamba install -c conda-forge pytest-cov
88- name : Generate Report
89- run : |
90- python -m pytest --cov-report=xml --cov=.
88+ python -m pytest tests/ -p no:faulthandler --cov-report=xml --cov=.
89+ # We could do this in its own action, but we'd have to setup the environment again.
9190 - name : Upload Coverage to Codecov
9291 uses : codecov/codecov-action@v2
9392
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