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Merge pull request #53 from scijava/scijava/scijava-ops-engine/data-provenance-revisions-revisions
Revisions on the Revisions of the Data Provenance branch
2 parents fa2ffef + d2f2aba commit a00c198

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‎imagej/imagej-ops2/src/main/java/net/imagej/ops2/deconvolve/NonCirculantNormalizationFactor.java‎

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@@ -94,7 +94,7 @@ public class NonCirculantNormalizationFactor<I extends RealType<I>, O extends Re
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@OpDependency(name = "filter.correlate")
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private Computers.Arity7<RandomAccessibleInterval<O>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, Boolean, Boolean, ExecutorService, RandomAccessibleInterval<O>> correlater;
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// @OpDependency(name = "math.divide") TODO: match an op here?
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// @OpDependency(name = "math.divide") TODO: match an Op here?
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private BiConsumer<RandomAccessibleInterval<O>, RandomAccessibleInterval<O>> divide = (numerResult, denom) -> {
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final O tmp = Util.getTypeFromInterval(numerResult).createVariable();
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LoopBuilder.setImages(numerResult, denom).forEachPixel((n, d) -> {

‎imagej/imagej-ops2/src/main/java/net/imagej/ops2/deconvolve/RichardsonLucyCorrection.java‎

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@@ -73,7 +73,7 @@ public class RichardsonLucyCorrection<I extends RealType<I>, O extends RealType<
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@OpDependency(name = "copy.rai")
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private Function<RandomAccessibleInterval<O>, RandomAccessibleInterval<O>> copy;
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// @OpDependency(name = "math.divide") TODO: match an op here?
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// @OpDependency(name = "math.divide") TODO: match an Op here?
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private BiConsumer<RandomAccessibleInterval<O>, RandomAccessibleInterval<I>> divide = (denomResult, numer) -> {
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final O tmp = Util.getTypeFromInterval(denomResult).createVariable();
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LoopBuilder.setImages(denomResult, numer).forEachPixel((d, n) -> {

‎imagej/imagej-ops2/src/main/java/net/imagej/ops2/eval/OpEvaluator.java‎

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@@ -48,7 +48,7 @@
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import org.scijava.types.Nil;
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/**
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* A Parsington {@link Evaluator} using available {@link Op}s.
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* A Parsington {@link Evaluator} using available Ops.
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*
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* @author Curtis Rueden
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*/

‎imagej/imagej-ops2/src/main/java/net/imagej/ops2/filter/tubeness/DefaultTubeness.java‎

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@@ -65,17 +65,17 @@
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* the large eigenvalue is negative, we return its absolute value and otherwise
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* return 0.
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* <ul>
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* <li>Source image is filtered first by a gaussian with 𝜎 that sets its scale.
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* <li>The the Hessian matrix is calculated for each pixel.
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* <li>Source image is filtered first by a gaussian with 𝜎 that sets its scale.</li>
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* <li>The the Hessian matrix is calculated for each pixel.</li>
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* <li>We yield the eigenvalues of the Hessian matrix. The output of the
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* tubeness filter is a combination of these eigenvalues:
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* tubeness filter is a combination of these eigenvalues:</li>
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* <ul>
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* <li>in 2D where <code>λ₂</code> is the largest eigenvalue:
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* <code>out = 𝜎 × 𝜎 × |λ₂|</code> if <code>λ₂</code> is negative, 0
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* otherwise.
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* otherwise.</li>
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* <li>in 3D where <code>λ₂</code> and <code>λ₃</code> are the largest
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* eigenvalues:, <code>out = 𝜎 × 𝜎 × sqrt( λ₂ * λ₃ )</code> if <code>λ₂</code>
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* and <code>λ₃</code> are negative, 0 otherwise.
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* and <code>λ₃</code> are negative, 0 otherwise.</li>
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* </ul>
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* </ul>
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* This results in enhancing filaments of roughly <code>𝜎 / sqrt(d)</code>

‎imagej/imagej-ops2/src/main/java/net/imagej/ops2/geom/CentroidII.java‎

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@@ -39,7 +39,7 @@
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import org.scijava.ops.spi.Op;
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/**
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* This {@link Op} computes the centroid of a {@link IterableRegion} (Label).
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* This Op computes the centroid of a {@link IterableRegion} (Label).
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*
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* @author Tim-Oliver Buchholz (University of Konstanz)
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* @implNote op names='geom.centroid', priority='1'

‎imagej/imagej-ops2/src/main/java/net/imagej/ops2/geom/CentroidLabelRegion.java‎

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import org.scijava.ops.spi.Op;
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/**
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* This {@link Op} computes the centroid of a {@link IterableRegion} (Label).
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* This Op computes the centroid of a {@link IterableRegion} (Label).
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*
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* @author Tim-Oliver Buchholz (University of Konstanz)
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* @implNote op names='geom.centroid', priority='2'

‎imagej/imagej-ops2/src/main/java/net/imagej/ops2/geom/DefaultCenterOfGravity.java‎

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import org.scijava.ops.spi.Op;
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/**
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* This {@link Op} computes the center of gravity of a {@link IterableRegion}
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* This Op computes the center of gravity of a {@link IterableRegion}
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* (Label).
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*
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* @author Daniel Seebacher (University of Konstanz)

‎imagej/imagej-ops2/src/main/java/net/imagej/ops2/geom/geom3d/DefaultInertiaTensor3D.java‎

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import org.scijava.ops.spi.OpDependency;
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/**
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* This {@link Op} computes the 2nd multi variate of a {@link IterableRegion}
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* This Op computes the 2nd multi variate of a {@link IterableRegion}
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* (Label).
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*
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* @author Tim-Oliver Buchholz (University of Konstanz)

‎imagej/imagej-ops2/src/main/java/net/imagej/ops2/geom/geom3d/DefaultInertiaTensor3DMesh.java‎

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import org.scijava.ops.spi.OpDependency;
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/**
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* This {@link Op} computes the 2nd multi variate of a {@link Mesh} (Label).
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* This Op computes the 2nd multi variate of a {@link Mesh} (Label).
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*
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* @author Tim-Oliver Buchholz (University of Konstanz)
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*@implNote op names='geom.secondMoment'

‎imagej/imagej-ops2/src/main/java/net/imagej/ops2/image/invert/InvertIIInteger.java‎

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// }
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//
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// public static <T extends RealType<T>> T minValue(T type) {
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// // TODO: Consider making minValue an op.
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// // TODO: Consider making minValue an Op.
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// final T min = type.createVariable();
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// if (type instanceof UnboundedIntegerType) min.setReal(0);
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// else min.setReal(min.getMinValue());
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// }
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//
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// public static <T extends RealType<T>> T maxValue(T type) {
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// // TODO: Consider making maxValue an op.
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// // TODO: Consider making maxValue an Op.
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// final T max = type.createVariable();
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// if (max instanceof Unsigned128BitType) {
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// final Unsigned128BitType t = (Unsigned128BitType) max;

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