Use 5th percentile for pseudocolor hue min

gselzer · gselzer · commit 7d3fa083bf8a · 2024-04-10T17:52:55.000-05:00
diff --git a/scijava-ops-flim/src/main/java/org/scijava/ops/flim/Pseudocolor.java b/scijava-ops-flim/src/main/java/org/scijava/ops/flim/Pseudocolor.java
@@ -107,7 +107,7 @@ public Img<ARGBType> apply(final FitResults rslt, @Nullable Float cMin,
 		// min, max = 20%, 80%
 		IterableInterval<FloatType> hRawII = Views.iterable(hRaw);
 		if (cMin == null) {
-			cMin = meaner.apply(hRawII).getRealFloat() * 0.2f;
+			cMin = percentiler.apply(hRawII, 5.0f).getRealFloat();
 			System.out.println("color_min automatically set to " + cMin);
 		}
 		if (cMax == null) {

Original file line number	Diff line number	Diff line change
`@@ -107,7 +107,7 @@ public Img<ARGBType> apply(final FitResults rslt, @Nullable Float cMin,`
`107`	`107`	`// min, max = 20%, 80%`
`108`	`108`	`IterableInterval<FloatType> hRawII = Views.iterable(hRaw);`
`109`	`109`	`if (cMin == null) {`
`110`		`- cMin = meaner.apply(hRawII).getRealFloat() * 0.2f;`
	`110`	`+ cMin = percentiler.apply(hRawII, 5.0f).getRealFloat();`
`111`	`111`	`System.out.println("color_min automatically set to " + cMin);`
`112`	`112`	`}`
`113`	`113`	`if (cMax == null) {`