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Move N5 into the SciJava component collection
The N5 project is now part of the SciJava component collection, meaning it will be tested in the melting pot to help validate that the SciJava Bill of Materials works with N5 as intended. N5's dependencies remain in the third party components section, and are now sorted into the list by project name.
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‎pom.xml‎

Lines changed: 122 additions & 100 deletions
Original file line numberDiff line numberDiff line change
@@ -567,6 +567,16 @@
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<VectorString.version>2.0.2</VectorString.version>
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<trakem2-transform.version>1.0.1</trakem2-transform.version>
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<!-- N5 - https://github.com/saalfeldlab/n5 -->
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<imglib2-label-multisets.version>0.9.0</imglib2-label-multisets.version>
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<n5.version>2.1.2</n5.version>
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<n5-imglib2.version>3.4.1</n5-imglib2.version>
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<n5-hdf5.version>1.0.4</n5-hdf5.version>
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<n5-aws-s3.version>2.1.0</n5-aws-s3.version>
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<n5-google-cloud.version>2.3.1</n5-google-cloud.version>
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<n5-viewer.version>2.2.0</n5-viewer.version>
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<!--
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BEGIN MANUALLY MANAGED VERSIONS
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@@ -648,6 +658,9 @@
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<!-- Third party components -->
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<!-- Amazon S3 - https://aws.amazon.com/sdkforjava -->
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<aws-java-sdk-s3.version>1.11.723</aws-java-sdk-s3.version>
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<!-- Apache POI - https://poi.apache.org/ -->
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<poi.version>3.17</poi.version>
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@@ -720,6 +733,13 @@
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<!-- Byte Code Generation Library - https://github.com/cglib/cglib -->
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<cglib.version>3.3.0</cglib.version>
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<!-- Google Cloud Storage - https://github.com/googleapis/google-cloud-java -->
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<google-api-services-oauth2.version>v2-rev20190313-1.30.8</google-api-services-oauth2.version>
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<google-cloud-resourcemanager.version>0.117.1-alpha</google-cloud-resourcemanager.version>
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<google-cloud-storage.version>1.103.1</google-cloud-storage.version>
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<google-http-client-jackson2.version>1.34.2</google-http-client-jackson2.version>
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<google-oauth-client-jetty.version>1.30.5</google-oauth-client-jetty.version>
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<!-- Gson - https://code.google.com/p/google-gson/ -->
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<gson.version>2.8.6</gson.version>
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@@ -735,6 +755,9 @@
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<!-- Jackrabbit WebDAV - https://jackrabbit.apache.org/jcr/components/jackrabbit-webdav-library.html -->
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<jackrabbit-webdav.version>2.21.0</jackrabbit-webdav.version>
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<!-- Jackson - https://github.com/FasterXML/jackson -->
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<jackson-databind.version>2.10.2</jackson-databind.version>
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<!-- Java Advanced Imaging - https://java.net/projects/jai-core -->
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<jai.version>1.1.3</jai.version>
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<jai-codec.version>${jai.version}</jai-codec.version>
@@ -851,6 +874,9 @@
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<logback-classic.version>${logback.version}</logback-classic.version>
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<logback-core.version>${logback.version}</logback-core.version>
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<!-- LZ4 compression for Java - https://github.com/lz4/lz4-java -->
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<lz4-java.version>1.7.1</lz4-java.version>
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<!-- MapDB - https://www.mapdb.org/ -->
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<mapdb.version>3.0.8</mapdb.version>
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@@ -867,24 +893,6 @@
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<mockito.version>2.19.0</mockito.version>
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<mockito-core.version>${mockito.version}</mockito-core.version>
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<!-- N5 - https://github.com/saalfeldlab/n5 -->
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<aws-java-sdk-s3.version>1.11.723</aws-java-sdk-s3.version>
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<google-cloud-storage.version>1.103.1</google-cloud-storage.version>
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<google-cloud-resourcemanager.version>0.117.1-alpha</google-cloud-resourcemanager.version>
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<google-api-services-oauth2.version>v2-rev20190313-1.30.8</google-api-services-oauth2.version>
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<google-http-client-jackson2.version>1.34.2</google-http-client-jackson2.version>
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<google-oauth-client-jetty.version>1.30.5</google-oauth-client-jetty.version>
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<imglib2-label-multisets.version>0.9.0</imglib2-label-multisets.version>
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<jackson-databind.version>2.10.2</jackson-databind.version>
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<lz4-java.version>1.7.1</lz4-java.version>
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<xz.version>1.8</xz.version>
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<n5.version>2.1.2</n5.version>
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<n5-imglib2.version>3.4.1</n5-imglib2.version>
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<n5-hdf5.version>1.0.4</n5-hdf5.version>
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<n5-aws-s3.version>2.1.0</n5-aws-s3.version>
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<n5-google-cloud.version>2.3.1</n5-google-cloud.version>
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<n5-viewer.version>2.2.0</n5-viewer.version>
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<!-- oj! Algorithms - https://github.com/optimatika/ojAlgo -->
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<ojalgo.version>45.1.1</ojalgo.version>
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@@ -930,6 +938,9 @@
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<!-- Weka - https://www.cs.waikato.ac.nz/ml/weka/ -->
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<weka.version>3.9.4</weka.version>
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<weka-dev.version>${weka.version}</weka-dev.version>
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<!-- XZ for Java - https://tukaani.org/xz/java.html -->
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<xz.version>1.8</xz.version>
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</properties>
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<dependencyManagement>
@@ -2138,6 +2149,44 @@
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<version>${trakem2-transform.version}</version>
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</dependency>
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<!-- N5 - https://github.com/saalfeldlab/n5 -->
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<dependency>
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<groupId>net.imglib2</groupId>
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<artifactId>imglib2-label-multisets</artifactId>
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<version>${imglib2-label-multisets.version}</version>
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</dependency>
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<dependency>
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<groupId>org.janelia.saalfeldlab</groupId>
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<artifactId>n5</artifactId>
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<version>${n5.version}</version>
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</dependency>
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<dependency>
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<groupId>org.janelia.saalfeldlab</groupId>
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<artifactId>n5-imglib2</artifactId>
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<version>${n5-imglib2.version}</version>
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</dependency>
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<dependency>
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<groupId>org.janelia.saalfeldlab</groupId>
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<artifactId>n5-hdf5</artifactId>
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<version>${n5-hdf5.version}</version>
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</dependency>
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<dependency>
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<groupId>org.janelia.saalfeldlab</groupId>
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<artifactId>n5-aws-s3</artifactId>
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<version>${n5-aws-s3.version}</version>
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</dependency>
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<dependency>
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<groupId>org.janelia.saalfeldlab</groupId>
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<artifactId>n5-google-cloud</artifactId>
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<version>${n5-google-cloud.version}</version>
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</dependency>
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<dependency>
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<groupId>org.janelia.saalfeldlab</groupId>
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<artifactId>n5-viewer</artifactId>
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<version>${n5-viewer.version}</version>
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</dependency>
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<!-- Open Microscopy Environment - https://github.com/ome -->
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<!-- Metakit - https://github.com/ome/ome-metakit -->
@@ -2437,6 +2486,13 @@
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<!-- Third party components -->
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<!-- Amazon S3 - https://aws.amazon.com/sdkforjava -->
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<dependency>
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<groupId>com.amazonaws</groupId>
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<artifactId>aws-java-sdk-s3</artifactId>
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<version>${aws-java-sdk-s3.version}</version>
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</dependency>
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<!-- Apache POI - https://poi.apache.org/ -->
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<dependency>
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<groupId>org.apache.poi</groupId>
@@ -2817,6 +2873,33 @@
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<version>${cglib.version}</version>
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</dependency>
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<!-- Google Cloud Storage - https://github.com/googleapis/google-cloud-java -->
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<dependency>
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<groupId>com.google.apis</groupId>
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<artifactId>google-api-services-oauth2</artifactId>
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<version>${google-api-services-oauth2.version}</version>
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</dependency>
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<dependency>
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<groupId>com.google.cloud</groupId>
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<artifactId>google-cloud-resourcemanager</artifactId>
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<version>${google-cloud-resourcemanager.version}</version>
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</dependency>
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<dependency>
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<groupId>com.google.cloud</groupId>
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<artifactId>google-cloud-storage</artifactId>
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<version>${google-cloud-storage.version}</version>
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</dependency>
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<dependency>
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<groupId>com.google.http-client</groupId>
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<artifactId>google-http-client-jackson2</artifactId>
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<version>${google-http-client-jackson2.version}</version>
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</dependency>
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<dependency>
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<groupId>com.google.oauth-client</groupId>
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<artifactId>google-oauth-client-jetty</artifactId>
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<version>${google-oauth-client-jetty.version}</version>
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</dependency>
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<!-- Gson - https://code.google.com/p/google-gson/ -->
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<dependency>
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<groupId>com.google.code.gson</groupId>
@@ -2852,6 +2935,13 @@
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<version>${jackrabbit-webdav.version}</version>
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</dependency>
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<!-- Jackson - https://github.com/FasterXML/jackson -->
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<dependency>
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<groupId>com.fasterxml.jackson.core</groupId>
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<artifactId>jackson-databind</artifactId>
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<version>${jackson-databind.version}</version>
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</dependency>
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<!-- Java Advanced Imaging - https://java.net/projects/jai-core -->
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<dependency>
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<groupId>com.sun.media</groupId>
@@ -3218,6 +3308,13 @@
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<version>${logback-core.version}</version>
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</dependency>
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<!-- LZ4 compression for Java - https://github.com/lz4/lz4-java -->
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<dependency>
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<groupId>org.lz4</groupId>
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<artifactId>lz4-java</artifactId>
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<version>${lz4-java.version}</version>
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</dependency>
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<!-- MapDB - http://www.mapdb.org/ -->
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<dependency>
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<groupId>org.mapdb</groupId>
@@ -3249,88 +3346,6 @@
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<version>${mines-jtk.version}</version>
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</dependency>
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<!-- N5 - https://github.com/saalfeldlab/n5 -->
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<dependency>
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<groupId>com.amazonaws</groupId>
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<artifactId>aws-java-sdk-s3</artifactId>
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<version>${aws-java-sdk-s3.version}</version>
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</dependency>
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<dependency>
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<groupId>com.google.cloud</groupId>
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<artifactId>google-cloud-storage</artifactId>
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<version>${google-cloud-storage.version}</version>
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</dependency>
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<dependency>
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<groupId>com.google.cloud</groupId>
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<artifactId>google-cloud-resourcemanager</artifactId>
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<version>${google-cloud-resourcemanager.version}</version>
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</dependency>
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<dependency>
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<groupId>com.google.apis</groupId>
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<artifactId>google-api-services-oauth2</artifactId>
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<version>${google-api-services-oauth2.version}</version>
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</dependency>
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<dependency>
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<groupId>com.google.http-client</groupId>
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<artifactId>google-http-client-jackson2</artifactId>
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<version>${google-http-client-jackson2.version}</version>
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</dependency>
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<dependency>
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<groupId>com.google.oauth-client</groupId>
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<artifactId>google-oauth-client-jetty</artifactId>
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<version>${google-oauth-client-jetty.version}</version>
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</dependency>
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<dependency>
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<groupId>net.imglib2</groupId>
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<artifactId>imglib2-label-multisets</artifactId>
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<version>${imglib2-label-multisets.version}</version>
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</dependency>
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<dependency>
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<groupId>com.fasterxml.jackson.core</groupId>
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<artifactId>jackson-databind</artifactId>
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<version>${jackson-databind.version}</version>
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</dependency>
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<dependency>
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<groupId>org.lz4</groupId>
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<artifactId>lz4-java</artifactId>
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<version>${lz4-java.version}</version>
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</dependency>
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<dependency>
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<groupId>org.tukaani</groupId>
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<artifactId>xz</artifactId>
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<version>${xz.version}</version>
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</dependency>
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<dependency>
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<groupId>org.janelia.saalfeldlab</groupId>
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<artifactId>n5</artifactId>
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<version>${n5.version}</version>
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</dependency>
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<dependency>
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<groupId>org.janelia.saalfeldlab</groupId>
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<artifactId>n5-imglib2</artifactId>
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<version>${n5-imglib2.version}</version>
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</dependency>
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<dependency>
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<groupId>org.janelia.saalfeldlab</groupId>
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<artifactId>n5-hdf5</artifactId>
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<version>${n5-hdf5.version}</version>
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</dependency>
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<dependency>
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<groupId>org.janelia.saalfeldlab</groupId>
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<artifactId>n5-aws-s3</artifactId>
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<version>${n5-aws-s3.version}</version>
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</dependency>
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<dependency>
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<groupId>org.janelia.saalfeldlab</groupId>
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<artifactId>n5-google-cloud</artifactId>
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<version>${n5-google-cloud.version}</version>
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</dependency>
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<dependency>
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<groupId>org.janelia.saalfeldlab</groupId>
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<artifactId>n5-viewer</artifactId>
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<version>${n5-viewer.version}</version>
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</dependency>
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<!-- oj! Algorithms - https://github.com/optimatika/ojAlgo -->
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<dependency>
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<groupId>org.ojalgo</groupId>
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</exclusions>
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</dependency>
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<!-- XZ for Java - https://tukaani.org/xz/java.html -->
3504+
<dependency>
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<groupId>org.tukaani</groupId>
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<artifactId>xz</artifactId>
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<version>${xz.version}</version>
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</dependency>
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<!-- Test scope dependencies -->
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<!-- JUnit - http://junit.org/ -->

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