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Commits on Aug 5, 2022

• fixed zoom interval plotting for bedpe.

  mchowdh200

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Commits on Jul 23, 2022

• got bedpe plotting working at a basic level.

  mchowdh200

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Commits on Jul 21, 2022

• ran Black formatting tool

  mchowdh200

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• add bedpe plotter. TODO: test

  mchowdh200

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Commits on May 12, 2022

• Merge pull request #157 from pontushojer/names-missing

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  ryanlayer

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Commits on Apr 14, 2022

• Handle case where a gene entry from a GFF is missing the "Name" attribute.

  pontushojer

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• Transcript and exons should end exactly on defined position. Default capstyle project these outside of start/end positions

  pontushojer

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• Move transcript name to top of drawing

  pontushojer

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• Move arrows into transcripts and add multiple throughout transcript at regular intervals.

  pontushojer

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Commits on Apr 13, 2022

• Unstack overlapping transcripts

  pontushojer

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Commits on Feb 25, 2022

• typo in help string for jitter

  

  Murad Chowhdury

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  Murad Chowhdury

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• Merge pull request #150 from pontushojer/vcf-multithread

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  mchowdh200

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• Merge pull request #151 from pontushojer/rm-option

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  ryanlayer

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• Merge pull request #147 from pontushojer/jitter

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  ryanlayer

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Commits on Feb 18, 2022

• Remove unused option `common_insert_size` (fix https://github.com/ryanlayer/samplot/issues/148)

  pontushojer

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• Jitter also for linked reads

  pontushojer

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• Add argument --jitter to add jitter to insert sizes.

  pontushojer

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Commits on Feb 15, 2022

• Enable multithread plotting from VCF

  pontushojer

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• Enable plot generation without using subprocess

  pontushojer

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• Jitter lines in y-dim to avoid overlaps

  pontushojer

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Commits on Feb 14, 2022

• Remove unused functions identified with (vulture)[https://github.com/jendrikseipp/vulture]

  pontushojer

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Commits on Jun 18, 2021

• add bump to v 1.3.0 (#142)

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  jbelyeu

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• Allow manual scaling of annotation track size and other fixes (#141)

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  jbelyeu

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Commits on Apr 9, 2021

• generalized exception handling for tabix

  jbelyeu

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• enabled csi indices for annotation files

  jbelyeu

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Commits on Apr 7, 2021

• version bump

  jbelyeu

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• remove offset/sci notation from ticks

  jbelyeu

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Commits on Feb 9, 2021

• fixed minor break in same_yaxis_scales from last commit

  jbelyeu

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• created max coverage option

  jbelyeu

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Commits on Jan 9, 2021

• changed gff to gff3

  jbelyeu

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• removed unset FORMAT fields and changed gff to gff3 explicitly

  jbelyeu

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• added catch for Nonetype and changed gff to gff3 explicitly

  jbelyeu

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• added test for vcf with gff3/bed files

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Commits on Jan 8, 2021

• bumps micro version

  

  Joe Brown

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• removes get_overlap bug

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  Joe Brown

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