Add tests for deprecations #833
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This class is internal only as well as the classes that inherit from it (Git::Index and Git::WorkingTree). Remove the deprecation warning and just remove the deprecated code.
Since Git::Stash#initialize is an internal only method, remove the deprecation warning and removed the deprecated code.
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Eliminate deprecation warnings from internal Git classes.
Add tests that verify that when deprecated methods are called, the deprecation warning is given.
Also, add tests for Base#set_index and Base#set_working.