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build & test using GitHub Workflows #80

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37a1bc3
build & test using GitHub Workflows
kangwonlee Sep 9, 2019
0545b26
echo vars
kangwonlee Oct 4, 2019
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11 changes: 11 additions & 0 deletions .github/workflows/before_install.sh
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if [[ $TEST_CONDA == 0 && $RUNNER_OS != "Linux" ]]; then
echo "Only Linux supported for non-Conda builds";
exit 1;
fi
# from here on assume $TEST_CONDA == 0 implies $TRAVIS_OS_NAME == linux

if [[ $TEST_CONDA == 0 ]]; then
sudo apt-get install liblapack-dev libblas-dev;
sudo apt-get install gfortran;
sudo apt-get install cmake;
fi
47 changes: 47 additions & 0 deletions .github/workflows/install.sh
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. ./.github/workflows/set_os_env.sh

#
# Install miniconda to allow quicker installation of dependencies
# See https://conda.io/docs/user-guide/tasks/use-conda-with-travis-ci.html
#

if [[ $RUNNER_OS == "macOS" ]]; then
. ./.github/workflows/wget_install_miniconda.sh
fi

hash -r
conda config --set always_yes yes --set changeps1 no
conda update -q --all
if [[ $TEST_CONDA == 1 ]]; then
conda install conda-build;
conda install conda-verify;
fi
conda info -a

#
# Set up a test environment for testing everything out
conda create -q -n test-environment python="$SLYCOT_PYTHON_VERSION" pip coverage nose numpy openblas
source activate test-environment


# install scikit-build
if [[ $TEST_CONDA == 0 ]]; then
conda config --append channels conda-forge;
conda install -c conda-forge scikit-build >=0.8.0 ;
fi
#
# Install the slycot package (two ways, to improve robustness). For the
# conda version, need to install lapack from conda-forge (no way to specify
# this in the recipe).
# add the conda-forge channel to the config, otherwise openblas or
# lapack cannot be found in the check
# with --override-channels to make sure the locally built slycot is installed
#
if [[ $TEST_CONDA == 1 ]]; then
conda config --append channels conda-forge;
conda build --python "$SLYCOT_PYTHON_VERSION" conda-recipe-openblas;
conda install conda-forge::openblas>=0.3.0;
conda install local::slycot;
else
CMAKE_GENERATOR="Unix Makefiles" python setup.py install;
fi
29 changes: 29 additions & 0 deletions .github/workflows/run_tests.sh
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# Local unit tests
# TODO: replace with nose?

echo "start xvfb ====================================="
Xvfb :99 &
export DISPLAY=:99

. ./.github/workflows/set_os_env.sh

echo "source activate test-environment ==============="
source activate test-environment
echo "change directory to .. ========================="
cd ..
echo "python Slycot/runtests.py ======================"
python Slycot/runtests.py --coverage --no-build

#
# As a deeper set of tests, get test against python-control as well
#
# Additional packages required for python-control

echo "conda install scipy matplotlib ================="
conda install scipy matplotlib
# Get python-control from source and install
echo "git clone python-control ======================="
git clone --depth 1 https://github.com/python-control/python-control.git control
cd control
echo "python python-control/setup.py test ==========="
python setup.py test
31 changes: 31 additions & 0 deletions .github/workflows/set_os_env.sh
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echo "exporting env vars ============================="

if [[ $RUNNER_OS == "Linux" ]]; then
export MINICONDA_PATH=$CONDA
export CONDA_SCRIPT=bin # l o
export BASHRC=.bashrc # l
elif [[ $RUNNER_OS == "macOS" ]]; then
export MINICONDA_PATH=$RUNNER_WORKSPACE/miniconda
export CONDA_SCRIPT=bin # l o
export BASHRC=.bash_profile # o w
elif [[ $RUNNER_OS == "Windows" ]]; then
export MINICONDA_PATH=`cygpath --unix $CONDA`
export CONDA_SCRIPT=Scripts # w
export BASHRC=.bash_profile # o w
fi

export MINICONDA_SUB_PATH=$MINICONDA_PATH/$CONDA_SCRIPT
export MINICONDA_PYTEST=$MINICONDA_PATH/envs/test-environment/$CONDA_SCRIPT/py.test
#
# Make sure that fortran compiler can find conda libraries
#
export LIBRARY_PATH="$MINICONDA_PATH/envs/test-environment/lib";
export PATH="$MINICONDA_PATH:$MINICONDA_SUB_PATH:$PATH"

echo "MINICONDA_PATH=$MINICONDA_PATH"
echo "CONDA_SCRIPT=$CONDA_SCRIPT"
echo "BASHRC=$BASHRC"
echo "MINICONDA_SUB_PATH=$MINICONDA_SUB_PATH"
echo "MINICONDA_PYTEST=$MINICONDA_PYTEST"
echo "LIBRARY_PATH=$LIBRARY_PATH"
echo "PATH=$PATH"
32 changes: 32 additions & 0 deletions .github/workflows/test_linux.yml
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name: CI linux

on : [push]

jobs:
build:
name: Python ${{ matrix.python }} with TEST_CONDA=${{ matrix.test_conda }}
runs-on: ubuntu-16.04
strategy:
matrix:
python: [2.7, 3.5, 3.6, 3.7]
test_conda: [0, 1]
steps:
- uses: actions/checkout@v1
- name: before install
env:
TEST_CONDA: ${{ matrix.test_conda }}
run:
source ./.github/workflows/before_install.sh
- name: install
env:
SLYCOT_PYTHON_VERSION: ${{ matrix.os }}
TEST_CONDA: ${{ matrix.test_conda }}
run:
source ./.github/workflows/install.sh
- name: run tests
run:
source ./.github/workflows/run_tests.sh
- name: coverall
run:
pip install coveralls
coveralls
31 changes: 31 additions & 0 deletions .github/workflows/test_osx.yml
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name: CI osx

on : [push]

jobs:
build:
name: Python ${{ matrix.python }} with TEST_CONDA=1
runs-on: macOS-10.14
strategy:
matrix:
python: [2.7, 3.5, 3.6, 3.7]
steps:
- uses: actions/checkout@v1
- name: before install
env:
TEST_CONDA: 1
run:
source ./.github/workflows/before_install.sh
- name: install
env:
SLYCOT_PYTHON_VERSION: ${{ matrix.os }}
TEST_CONDA: 1
run:
source ./.github/workflows/install.sh
- name: run tests
run:
source ./.github/workflows/run_tests.sh
- name: coverall
run:
pip install coveralls
coveralls
17 changes: 17 additions & 0 deletions .github/workflows/wget_install_miniconda.sh
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echo "============================================"
echo "Downloading and Installing Miniconda for"
echo "============================================"

export MINICONDA_DOWNLOAD=$MINICONDA_PATH/download
echo "MINICONDA_DOWNLOAD = $MINICONDA_DOWNLOAD"

mkdir -p $MINICONDA_DOWNLOAD;
echo "downloading miniconda.sh for osx ==========="
wget https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh -O $MINICONDA_DOWNLOAD/miniconda.sh;

echo "installing miniconda ======================="
bash $MINICONDA_DOWNLOAD/miniconda.sh -b -u -p $MINICONDA_PATH;

echo "============================================"
echo "Finished Installing Miniconda"
echo "============================================"