* Add __extra_megahit_args to assemble() (issue #86)

* Better error message when user mis-specifies the ngless version string

(issue #84)

Version 0.9.1 2018-07-17 by luispedro

* Add biorxiv citation

import System.IO (hIsTerminalDevice, stdout)

import System.IO.Unsafe (unsafePerformIO)

import System.IO.SafeWrite (withOutputFile)

import Data.IORef (IORef, newIORef, modifyIORef, readIORef)

import Data.List (sort)

import Data.Aeson ((.=))

import qualified Data.ByteString.Lazy as BL

import qualified Graphics.Rendering.Chart.Easy as G

import qualified Graphics.Rendering.Chart.Backend.Cairo as G

import Data.FastQ (FastQEncoding(..), encodingName)

output :: OutputType -> Int -> String -> NGLessIO ()

output !ot !lno !msg = do

isTerm <- liftIO $ hIsTerminalDevice stdout

verb <- nConfVerbosity <$> nglConfiguration

traceSet <- nConfTrace <$> nglConfiguration

colorOpt <- nConfColor <$> nglConfiguration

let sp = traceSet || shouldPrint isTerm ot verb

doColor = case colorOpt of

ForceColor -> True

NoColor -> False

c <- colorFor ot

liftIO $ do

t <- getZonedTime