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[Bug]: Saving as PGF results in invalid code (fails when including it in Latex document) #21708

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[Bug]: Saving as PGF results in invalid code (fails when including it in Latex document)#21708
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backend: pgfstatus: needs clarificationIssues that need more information to resolve.

Description

@ldorigo
ldorigo
opened on Nov 22, 2021

Bug summary

Hello, When I run the code below to make a histogram with logarithmic axis, the resulting pgf file is invalid - it appears to contain paths that are way out of bounds?

Code for reproduction

import matplotlib.pyplot as plt
import numpy as np

# I used seaborn for the theme, which makes it fail in a similar way, but it also fails without
# import seaborn as sns
# sns.set_theme(style="ticks", color_codes=True)


# Random weights with exponential distribution, 1M samples
weights =  np.random.exponential(scale=1, size=1000000)

max_x = max(weights)
plt.figure(figsize=(8, 5))
plt.hist(weights, bins=np.arange(1, max_x + 1), log=True)

plt.xlabel("Weight")
plt.ylabel("Frequency")
plt.title("Histogram of edge weights (N. of relations between two nodes)")
plt.tight_layout()
    
# plt.savefig("weight_distribution.pgf", backend="pgf") # This also fails but in a different way :D
plt.savefig("weight_distribution.pgf")
plt.show()

Actual outcome

This results in the following pgf file:

Details 
%% Creator: Matplotlib, PGF backend
%%
%% To include the figure in your LaTeX document, write
%%   \input{<filename>.pgf}
%%
%% Make sure the required packages are loaded in your preamble
%%   \usepackage{pgf}
%%
%% Figures using additional raster images can only be included by \input if
%% they are in the same directory as the main LaTeX file. For loading figures
%% from other directories you can use the `import` package
%%   \usepackage{import}
%%
%% and then include the figures with
%%   \import{<path to file>}{<filename>.pgf}
%%
%% Matplotlib used the following preamble
%%   \usepackage{fontspec}
%%   \setmainfont{DejaVuSerif.ttf}[Path=\detokenize{/home/ldorigo/Dropbox/studies/SDU/BP/Code/medrel_venv/lib/python3.9/site-packages/matplotlib/mpl-data/fonts/ttf/}]
%%   \setsansfont{DejaVuSans.ttf}[Path=\detokenize{/home/ldorigo/Dropbox/studies/SDU/BP/Code/medrel_venv/lib/python3.9/site-packages/matplotlib/mpl-data/fonts/ttf/}]
%%   \setmonofont{DejaVuSansMono.ttf}[Path=\detokenize{/home/ldorigo/Dropbox/studies/SDU/BP/Code/medrel_venv/lib/python3.9/site-packages/matplotlib/mpl-data/fonts/ttf/}]
%%
\begingroup%
\makeatletter%
\begin{pgfpicture}%
\pgfpathrectangle{\pgfpointorigin}{\pgfqpoint{8.000000in}{5.000000in}}%
\pgfusepath{use as bounding box, clip}%
\begin{pgfscope}%
\pgfsetbuttcap%
\pgfsetmiterjoin%
\pgfsetlinewidth{0.000000pt}%
\definecolor{currentstroke}{rgb}{1.000000,1.000000,1.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetstrokeopacity{0.000000}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{0.000000in}{0.000000in}}%
\pgfpathlineto{\pgfqpoint{8.000000in}{0.000000in}}%
\pgfpathlineto{\pgfqpoint{8.000000in}{5.000000in}}%
\pgfpathlineto{\pgfqpoint{0.000000in}{5.000000in}}%
\pgfpathclose%
\pgfusepath{}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfsetbuttcap%
\pgfsetmiterjoin%
\definecolor{currentfill}{rgb}{1.000000,1.000000,1.000000}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.000000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetstrokeopacity{0.000000}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{0.703406in}{0.580556in}}%
\pgfpathlineto{\pgfqpoint{7.850000in}{0.580556in}}%
\pgfpathlineto{\pgfqpoint{7.850000in}{4.627778in}}%
\pgfpathlineto{\pgfqpoint{0.703406in}{4.627778in}}%
\pgfpathclose%
\pgfusepath{fill}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfpathrectangle{\pgfqpoint{0.703406in}{0.580556in}}{\pgfqpoint{7.146594in}{4.047222in}}%
\pgfusepath{clip}%
\pgfsetbuttcap%
\pgfsetmiterjoin%
\definecolor{currentfill}{rgb}{0.121569,0.466667,0.705882}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.000000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetstrokeopacity{0.000000}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{1.028251in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{1.569660in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{1.569660in}{4.443813in}}%
\pgfpathlineto{\pgfqpoint{1.028251in}{4.443813in}}%
\pgfpathclose%
\pgfusepath{fill}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfpathrectangle{\pgfqpoint{0.703406in}{0.580556in}}{\pgfqpoint{7.146594in}{4.047222in}}%
\pgfusepath{clip}%
\pgfsetbuttcap%
\pgfsetmiterjoin%
\definecolor{currentfill}{rgb}{0.121569,0.466667,0.705882}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.000000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetstrokeopacity{0.000000}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{1.569660in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{2.111068in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{2.111068in}{4.116795in}}%
\pgfpathlineto{\pgfqpoint{1.569660in}{4.116795in}}%
\pgfpathclose%
\pgfusepath{fill}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfpathrectangle{\pgfqpoint{0.703406in}{0.580556in}}{\pgfqpoint{7.146594in}{4.047222in}}%
\pgfusepath{clip}%
\pgfsetbuttcap%
\pgfsetmiterjoin%
\definecolor{currentfill}{rgb}{0.121569,0.466667,0.705882}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.000000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetstrokeopacity{0.000000}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{2.111068in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{2.652477in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{2.652477in}{3.787100in}}%
\pgfpathlineto{\pgfqpoint{2.111068in}{3.787100in}}%
\pgfpathclose%
\pgfusepath{fill}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfpathrectangle{\pgfqpoint{0.703406in}{0.580556in}}{\pgfqpoint{7.146594in}{4.047222in}}%
\pgfusepath{clip}%
\pgfsetbuttcap%
\pgfsetmiterjoin%
\definecolor{currentfill}{rgb}{0.121569,0.466667,0.705882}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.000000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetstrokeopacity{0.000000}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{2.652477in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{3.193886in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{3.193886in}{3.462983in}}%
\pgfpathlineto{\pgfqpoint{2.652477in}{3.462983in}}%
\pgfpathclose%
\pgfusepath{fill}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfpathrectangle{\pgfqpoint{0.703406in}{0.580556in}}{\pgfqpoint{7.146594in}{4.047222in}}%
\pgfusepath{clip}%
\pgfsetbuttcap%
\pgfsetmiterjoin%
\definecolor{currentfill}{rgb}{0.121569,0.466667,0.705882}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.000000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetstrokeopacity{0.000000}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{3.193886in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{3.735294in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{3.735294in}{3.132816in}}%
\pgfpathlineto{\pgfqpoint{3.193886in}{3.132816in}}%
\pgfpathclose%
\pgfusepath{fill}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfpathrectangle{\pgfqpoint{0.703406in}{0.580556in}}{\pgfqpoint{7.146594in}{4.047222in}}%
\pgfusepath{clip}%
\pgfsetbuttcap%
\pgfsetmiterjoin%
\definecolor{currentfill}{rgb}{0.121569,0.466667,0.705882}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.000000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetstrokeopacity{0.000000}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{3.735294in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{4.276703in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{4.276703in}{2.812402in}}%
\pgfpathlineto{\pgfqpoint{3.735294in}{2.812402in}}%
\pgfpathclose%
\pgfusepath{fill}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfpathrectangle{\pgfqpoint{0.703406in}{0.580556in}}{\pgfqpoint{7.146594in}{4.047222in}}%
\pgfusepath{clip}%
\pgfsetbuttcap%
\pgfsetmiterjoin%
\definecolor{currentfill}{rgb}{0.121569,0.466667,0.705882}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.000000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetstrokeopacity{0.000000}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{4.276703in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{4.818112in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{4.818112in}{2.477726in}}%
\pgfpathlineto{\pgfqpoint{4.276703in}{2.477726in}}%
\pgfpathclose%
\pgfusepath{fill}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfpathrectangle{\pgfqpoint{0.703406in}{0.580556in}}{\pgfqpoint{7.146594in}{4.047222in}}%
\pgfusepath{clip}%
\pgfsetbuttcap%
\pgfsetmiterjoin%
\definecolor{currentfill}{rgb}{0.121569,0.466667,0.705882}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.000000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetstrokeopacity{0.000000}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{4.818112in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{5.359520in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{5.359520in}{2.173713in}}%
\pgfpathlineto{\pgfqpoint{4.818112in}{2.173713in}}%
\pgfpathclose%
\pgfusepath{fill}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfpathrectangle{\pgfqpoint{0.703406in}{0.580556in}}{\pgfqpoint{7.146594in}{4.047222in}}%
\pgfusepath{clip}%
\pgfsetbuttcap%
\pgfsetmiterjoin%
\definecolor{currentfill}{rgb}{0.121569,0.466667,0.705882}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.000000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetstrokeopacity{0.000000}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{5.359520in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{5.900929in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{5.900929in}{1.845374in}}%
\pgfpathlineto{\pgfqpoint{5.359520in}{1.845374in}}%
\pgfpathclose%
\pgfusepath{fill}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfpathrectangle{\pgfqpoint{0.703406in}{0.580556in}}{\pgfqpoint{7.146594in}{4.047222in}}%
\pgfusepath{clip}%
\pgfsetbuttcap%
\pgfsetmiterjoin%
\definecolor{currentfill}{rgb}{0.121569,0.466667,0.705882}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.000000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetstrokeopacity{0.000000}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{5.900929in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{6.442338in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{6.442338in}{1.527555in}}%
\pgfpathlineto{\pgfqpoint{5.900929in}{1.527555in}}%
\pgfpathclose%
\pgfusepath{fill}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfpathrectangle{\pgfqpoint{0.703406in}{0.580556in}}{\pgfqpoint{7.146594in}{4.047222in}}%
\pgfusepath{clip}%
\pgfsetbuttcap%
\pgfsetmiterjoin%
\definecolor{currentfill}{rgb}{0.121569,0.466667,0.705882}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.000000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetstrokeopacity{0.000000}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{6.442338in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{6.983746in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{6.983746in}{0.990991in}}%
\pgfpathlineto{\pgfqpoint{6.442338in}{0.990991in}}%
\pgfpathclose%
\pgfusepath{fill}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfpathrectangle{\pgfqpoint{0.703406in}{0.580556in}}{\pgfqpoint{7.146594in}{4.047222in}}%
\pgfusepath{clip}%
\pgfsetbuttcap%
\pgfsetmiterjoin%
\definecolor{currentfill}{rgb}{0.121569,0.466667,0.705882}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.000000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetstrokeopacity{0.000000}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{6.983746in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{7.525155in}{-751.915504in}}%
\pgfpathlineto{\pgfqpoint{7.525155in}{0.764520in}}%
\pgfpathlineto{\pgfqpoint{6.983746in}{0.764520in}}%
\pgfpathclose%
\pgfusepath{fill}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfsetbuttcap%
\pgfsetroundjoin%
\definecolor{currentfill}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.803000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetdash{}{0pt}%
\pgfsys@defobject{currentmarker}{\pgfqpoint{0.000000in}{-0.048611in}}{\pgfqpoint{0.000000in}{0.000000in}}{%
\pgfpathmoveto{\pgfqpoint{0.000000in}{0.000000in}}%
\pgfpathlineto{\pgfqpoint{0.000000in}{-0.048611in}}%
\pgfusepath{stroke,fill}%
}%
\begin{pgfscope}%
\pgfsys@transformshift{1.569660in}{0.580556in}%
\pgfsys@useobject{currentmarker}{}%
\end{pgfscope}%
\end{pgfscope}%
\begin{pgfscope}%
\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{textcolor}%
\pgfsetfillcolor{textcolor}%
\pgftext[x=1.569660in,y=0.483333in,,top]{\color{textcolor}\sffamily\fontsize{10.000000}{12.000000}\selectfont 2}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfsetbuttcap%
\pgfsetroundjoin%
\definecolor{currentfill}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.803000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetdash{}{0pt}%
\pgfsys@defobject{currentmarker}{\pgfqpoint{0.000000in}{-0.048611in}}{\pgfqpoint{0.000000in}{0.000000in}}{%
\pgfpathmoveto{\pgfqpoint{0.000000in}{0.000000in}}%
\pgfpathlineto{\pgfqpoint{0.000000in}{-0.048611in}}%
\pgfusepath{stroke,fill}%
}%
\begin{pgfscope}%
\pgfsys@transformshift{2.652477in}{0.580556in}%
\pgfsys@useobject{currentmarker}{}%
\end{pgfscope}%
\end{pgfscope}%
\begin{pgfscope}%
\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{textcolor}%
\pgfsetfillcolor{textcolor}%
\pgftext[x=2.652477in,y=0.483333in,,top]{\color{textcolor}\sffamily\fontsize{10.000000}{12.000000}\selectfont 4}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfsetbuttcap%
\pgfsetroundjoin%
\definecolor{currentfill}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.803000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetdash{}{0pt}%
\pgfsys@defobject{currentmarker}{\pgfqpoint{0.000000in}{-0.048611in}}{\pgfqpoint{0.000000in}{0.000000in}}{%
\pgfpathmoveto{\pgfqpoint{0.000000in}{0.000000in}}%
\pgfpathlineto{\pgfqpoint{0.000000in}{-0.048611in}}%
\pgfusepath{stroke,fill}%
}%
\begin{pgfscope}%
\pgfsys@transformshift{3.735294in}{0.580556in}%
\pgfsys@useobject{currentmarker}{}%
\end{pgfscope}%
\end{pgfscope}%
\begin{pgfscope}%
\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{textcolor}%
\pgfsetfillcolor{textcolor}%
\pgftext[x=3.735294in,y=0.483333in,,top]{\color{textcolor}\sffamily\fontsize{10.000000}{12.000000}\selectfont 6}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfsetbuttcap%
\pgfsetroundjoin%
\definecolor{currentfill}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.803000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetdash{}{0pt}%
\pgfsys@defobject{currentmarker}{\pgfqpoint{0.000000in}{-0.048611in}}{\pgfqpoint{0.000000in}{0.000000in}}{%
\pgfpathmoveto{\pgfqpoint{0.000000in}{0.000000in}}%
\pgfpathlineto{\pgfqpoint{0.000000in}{-0.048611in}}%
\pgfusepath{stroke,fill}%
}%
\begin{pgfscope}%
\pgfsys@transformshift{4.818112in}{0.580556in}%
\pgfsys@useobject{currentmarker}{}%
\end{pgfscope}%
\end{pgfscope}%
\begin{pgfscope}%
\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{textcolor}%
\pgfsetfillcolor{textcolor}%
\pgftext[x=4.818112in,y=0.483333in,,top]{\color{textcolor}\sffamily\fontsize{10.000000}{12.000000}\selectfont 8}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfsetbuttcap%
\pgfsetroundjoin%
\definecolor{currentfill}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.803000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetdash{}{0pt}%
\pgfsys@defobject{currentmarker}{\pgfqpoint{0.000000in}{-0.048611in}}{\pgfqpoint{0.000000in}{0.000000in}}{%
\pgfpathmoveto{\pgfqpoint{0.000000in}{0.000000in}}%
\pgfpathlineto{\pgfqpoint{0.000000in}{-0.048611in}}%
\pgfusepath{stroke,fill}%
}%
\begin{pgfscope}%
\pgfsys@transformshift{5.900929in}{0.580556in}%
\pgfsys@useobject{currentmarker}{}%
\end{pgfscope}%
\end{pgfscope}%
\begin{pgfscope}%
\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{textcolor}%
\pgfsetfillcolor{textcolor}%
\pgftext[x=5.900929in,y=0.483333in,,top]{\color{textcolor}\sffamily\fontsize{10.000000}{12.000000}\selectfont 10}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfsetbuttcap%
\pgfsetroundjoin%
\definecolor{currentfill}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.803000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetdash{}{0pt}%
\pgfsys@defobject{currentmarker}{\pgfqpoint{0.000000in}{-0.048611in}}{\pgfqpoint{0.000000in}{0.000000in}}{%
\pgfpathmoveto{\pgfqpoint{0.000000in}{0.000000in}}%
\pgfpathlineto{\pgfqpoint{0.000000in}{-0.048611in}}%
\pgfusepath{stroke,fill}%
}%
\begin{pgfscope}%
\pgfsys@transformshift{6.983746in}{0.580556in}%
\pgfsys@useobject{currentmarker}{}%
\end{pgfscope}%
\end{pgfscope}%
\begin{pgfscope}%
\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{textcolor}%
\pgfsetfillcolor{textcolor}%
\pgftext[x=6.983746in,y=0.483333in,,top]{\color{textcolor}\sffamily\fontsize{10.000000}{12.000000}\selectfont 12}%
\end{pgfscope}%
\begin{pgfscope}%
\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{textcolor}%
\pgfsetfillcolor{textcolor}%
\pgftext[x=4.276703in,y=0.293365in,,top]{\color{textcolor}\sffamily\fontsize{10.000000}{12.000000}\selectfont Weight}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfsetbuttcap%
\pgfsetroundjoin%
\definecolor{currentfill}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.803000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
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}%
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}%
\begin{pgfscope}%
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}%
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}%
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}%
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}%
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}%
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\end{pgfscope}%
\begin{pgfscope}%
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}%
\begin{pgfscope}%
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\end{pgfscope}%
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\pgfsetstrokecolor{currentstroke}%
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\pgfpathlineto{\pgfqpoint{-0.027778in}{0.000000in}}%
\pgfusepath{stroke,fill}%
}%
\begin{pgfscope}%
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\end{pgfscope}%
\end{pgfscope}%
\begin{pgfscope}%
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\pgfsetstrokecolor{currentstroke}%
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}%
\begin{pgfscope}%
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\end{pgfscope}%
\end{pgfscope}%
\begin{pgfscope}%
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\pgfsetstrokecolor{currentstroke}%
\pgfsetdash{}{0pt}%
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}%
\begin{pgfscope}%
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\pgfsetstrokecolor{currentstroke}%
\pgfsetdash{}{0pt}%
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\pgfpathmoveto{\pgfqpoint{-0.000000in}{0.000000in}}%
\pgfpathlineto{\pgfqpoint{-0.027778in}{0.000000in}}%
\pgfusepath{stroke,fill}%
}%
\begin{pgfscope}%
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\pgfsys@useobject{currentmarker}{}%
\end{pgfscope}%
\end{pgfscope}%
\begin{pgfscope}%
\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{textcolor}%
\pgfsetfillcolor{textcolor}%
\pgftext[x=0.349432in,y=2.604167in,,bottom,rotate=90.000000]{\color{textcolor}\sffamily\fontsize{10.000000}{12.000000}\selectfont Frequency}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfsetrectcap%
\pgfsetmiterjoin%
\pgfsetlinewidth{0.803000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{0.703406in}{0.580556in}}%
\pgfpathlineto{\pgfqpoint{0.703406in}{4.627778in}}%
\pgfusepath{stroke}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfsetrectcap%
\pgfsetmiterjoin%
\pgfsetlinewidth{0.803000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{7.850000in}{0.580556in}}%
\pgfpathlineto{\pgfqpoint{7.850000in}{4.627778in}}%
\pgfusepath{stroke}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfsetrectcap%
\pgfsetmiterjoin%
\pgfsetlinewidth{0.803000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{0.703406in}{0.580556in}}%
\pgfpathlineto{\pgfqpoint{7.850000in}{0.580556in}}%
\pgfusepath{stroke}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfsetrectcap%
\pgfsetmiterjoin%
\pgfsetlinewidth{0.803000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{0.703406in}{4.627778in}}%
\pgfpathlineto{\pgfqpoint{7.850000in}{4.627778in}}%
\pgfusepath{stroke}%
\end{pgfscope}%
\begin{pgfscope}%
\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{textcolor}%
\pgfsetfillcolor{textcolor}%
\pgftext[x=4.276703in,y=4.711111in,,base]{\color{textcolor}\sffamily\fontsize{12.000000}{14.400000}\selectfont Histogram of edge weights (N. of relations between two nodes)}%
\end{pgfscope}%
\end{pgfpicture}%
\makeatother%
\endgroup%

[@tacaswell edited to fold very long output]

Expected outcome

Pgf output that can be rendered by Latex

Additional information

No response

Operating system

Arch

Matplotlib Version

3.4.3

Matplotlib Backend

pgf (I assume? not setting it explicitly but I'm saving as pgf)

Python version

3.9

Jupyter version

No response

Installation

pip

Activity

  1. jklymak commented on Nov 22, 2021

    @jklymak
    jklymak
    on Nov 22, 2021
    Member

    I think this is #4482 which was fixed in just-released 3.5.0. Can you give that a try?

  2. ldorigo commented on Nov 22, 2021

    @ldorigo
    ldorigo
    on Nov 22, 2021
    Author

    Hi, seems to be the same issue, but 3.5.0 does not fix it. Here's the output from the new version:

    Details 
    %% Creator: Matplotlib, PGF backend
%%
%% To include the figure in your LaTeX document, write
%%   \input{<filename>.pgf}
%%
%% Make sure the required packages are loaded in your preamble
%%   \usepackage{pgf}
%%
%% Also ensure that all the required font packages are loaded; for instance,
%% the lmodern package is sometimes necessary when using math font.
%%   \usepackage{lmodern}
%%
%% Figures using additional raster images can only be included by \input if
%% they are in the same directory as the main LaTeX file. For loading figures
%% from other directories you can use the `import` package
%%   \usepackage{import}
%%
%% and then include the figures with
%%   \import{<path to file>}{<filename>.pgf}
%%
%% Matplotlib used the following preamble
%%   \usepackage{fontspec}
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}%
\begin{pgfscope}%
\pgfsys@transformshift{0.703406in}{4.398989in}%
\pgfsys@useobject{currentmarker}{}%
\end{pgfscope}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfsetbuttcap%
\pgfsetroundjoin%
\definecolor{currentfill}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.602250pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetdash{}{0pt}%
\pgfsys@defobject{currentmarker}{\pgfqpoint{-0.027778in}{0.000000in}}{\pgfqpoint{-0.000000in}{0.000000in}}{%
\pgfpathmoveto{\pgfqpoint{-0.000000in}{0.000000in}}%
\pgfpathlineto{\pgfqpoint{-0.027778in}{0.000000in}}%
\pgfusepath{stroke,fill}%
}%
\begin{pgfscope}%
\pgfsys@transformshift{0.703406in}{4.519720in}%
\pgfsys@useobject{currentmarker}{}%
\end{pgfscope}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfsetbuttcap%
\pgfsetroundjoin%
\definecolor{currentfill}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetfillcolor{currentfill}%
\pgfsetlinewidth{0.602250pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetdash{}{0pt}%
\pgfsys@defobject{currentmarker}{\pgfqpoint{-0.027778in}{0.000000in}}{\pgfqpoint{-0.000000in}{0.000000in}}{%
\pgfpathmoveto{\pgfqpoint{-0.000000in}{0.000000in}}%
\pgfpathlineto{\pgfqpoint{-0.027778in}{0.000000in}}%
\pgfusepath{stroke,fill}%
}%
\begin{pgfscope}%
\pgfsys@transformshift{0.703406in}{4.605380in}%
\pgfsys@useobject{currentmarker}{}%
\end{pgfscope}%
\end{pgfscope}%
\begin{pgfscope}%
\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{textcolor}%
\pgfsetfillcolor{textcolor}%
\pgftext[x=0.349432in,y=2.604167in,,bottom,rotate=90.000000]{\color{textcolor}\sffamily\fontsize{10.000000}{12.000000}\selectfont Frequency}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfsetrectcap%
\pgfsetmiterjoin%
\pgfsetlinewidth{0.803000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{0.703406in}{0.580556in}}%
\pgfpathlineto{\pgfqpoint{0.703406in}{4.627778in}}%
\pgfusepath{stroke}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfsetrectcap%
\pgfsetmiterjoin%
\pgfsetlinewidth{0.803000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{7.850000in}{0.580556in}}%
\pgfpathlineto{\pgfqpoint{7.850000in}{4.627778in}}%
\pgfusepath{stroke}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfsetrectcap%
\pgfsetmiterjoin%
\pgfsetlinewidth{0.803000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{0.703406in}{0.580556in}}%
\pgfpathlineto{\pgfqpoint{7.850000in}{0.580556in}}%
\pgfusepath{stroke}%
\end{pgfscope}%
\begin{pgfscope}%
\pgfsetrectcap%
\pgfsetmiterjoin%
\pgfsetlinewidth{0.803000pt}%
\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{currentstroke}%
\pgfsetdash{}{0pt}%
\pgfpathmoveto{\pgfqpoint{0.703406in}{4.627778in}}%
\pgfpathlineto{\pgfqpoint{7.850000in}{4.627778in}}%
\pgfusepath{stroke}%
\end{pgfscope}%
\begin{pgfscope}%
\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%
\pgfsetstrokecolor{textcolor}%
\pgfsetfillcolor{textcolor}%
\pgftext[x=4.276703in,y=4.711111in,,base]{\color{textcolor}\sffamily\fontsize{12.000000}{14.400000}\selectfont Histogram of edge weights (N. of relations between two nodes)}%
\end{pgfscope}%
\end{pgfpicture}%
\makeatother%
\endgroup%

    [@tacaswell edited to fold long output]

  3. ldorigo commented on Nov 22, 2021

    @ldorigo
    ldorigo
    on Nov 22, 2021
    Author

    The offending lines highlighted by Latex are

    \pgfpathmoveto{\pgfqpoint{1.956380in}{-226.705462in}}%

    Which looks much more reasonable than the ones I had before. The issue you linked mentions that around 226in is the limit after which Latex refuses to compile, and the bad lines are just around that limit - maybe the clipping just needs to be adjusted?

  4. ldorigo commented on Nov 22, 2021

    @ldorigo
    ldorigo
    on Nov 22, 2021
    Author

    yes, I can confirm that replacing all the occurrences of -226.705462in by -226.00in fixes the issue and allows Latex to render it correctly.

  5. jklymak
    added
    backend: pgf
    on Nov 22, 2021

  6. jklymak commented on Nov 22, 2021

    @jklymak
    jklymak
    on Nov 22, 2021
    Member

    (Any chance you could trim the above dump of the pgfs to just the offending lines?)

    This seems to be some sort of roundoff error in the path code. clip is set appropriately, but the path clipping allows values just outside the clip through for some reason. i.e the clip path is properly set to (-16383.0, -16383.0, 16383.0, 16383.0) (for dpi =72.27), but the path being clipped contains -16384 and these are allowed through without being clipped. Ping @QuLogic who put #20410 in, and may be familiar with the path code...

  7. tacaswell commented on Nov 22, 2021

    @tacaswell
    tacaswell
    on Nov 22, 2021
    Member

    @ldorigo I hope you do not mind I took the liberty of adding <details> ... </details> tags to your posts so the full pgf output is folded by default (but still accessible if needed).

  8. ldorigo commented on Nov 22, 2021

    @ldorigo
    ldorigo
    on Nov 22, 2021
    Author

    @ldorigo I hope you do not mind I took the liberty of adding <details> ... </details> tags to your posts so the full pgf output is folded by default (but still accessible if needed).

    Thanks - couldn't remember how to do that.

  9. QuLogic commented on Nov 25, 2021

    @QuLogic
    QuLogic
    on Nov 25, 2021
    Member

    How do you test the pgf file? We should try to do that, because just running the script seems to work fine.

    That constant was determined in the original issue: #4482 (comment) but I rounded it down a little. The clipping ends up at 16384 due to a +1 in PathClipper, for reasons I really don't know. I thought the rounding down was sufficient, but I guess we should take account of the +1 more specifically if that ends up being DPI-dependent.

  10. ldorigo commented on Nov 29, 2021

    @ldorigo
    ldorigo
    on Nov 29, 2021
    Author

    How do you test the pgf file? We should try to do that, because just running the script seems to work fine.

    That constant was determined in the original issue: #4482 (comment) but I rounded it down a little. The clipping ends up at 16384 due to a +1 in PathClipper, for reasons I really don't know. I thought the rounding down was sufficient, but I guess we should take account of the +1 more specifically if that ends up being DPI-dependent.

    I just include it in a Latex file (\input{...}). But you can also just set the backend to pgf (something like plt.savefig("fig.pdf", backend="pgf"), I think? ) - that makes it fail when running (although it's still the latex rendering that fails)

  11. QuLogic commented on Nov 29, 2021

    @QuLogic
    QuLogic
    on Nov 29, 2021
    Member

    Please be specific. I cannot reproduce any error running either savefig from your original example, or going direct to PDF with the PGF backend..

  12. QuLogic
    added
    status: needs clarificationIssues that need more information to resolve.
    on Apr 7, 2023

  13. jklymak commented on Oct 8, 2023

    @jklymak
    jklymak
    on Oct 8, 2023
    Member

    I'll close for lack of response, but if this is still an issue, please request a re-open.

  14. jklymak
    closed this as not plannedon Oct 8, 2023
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