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Commits on Dec 28, 2010

• [maven-release-plugin] copy for tag biojava-3.0

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• [maven-release-plugin] prepare release biojava-3.0

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Commits on Dec 25, 2010

• working around the no-download chem comp provider.

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Commits on Dec 24, 2010

• cleanup

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• user now explicitely has to request download of big file...

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• new junit test for checking of correct loading of chem comps

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• fixing a problem with some chem comp definitions

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Commits on Dec 23, 2010

• Changed test case reference where stop codons are being returned as * now

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Commits on Dec 22, 2010

• updating version nr. of depedencies.

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Commits on Dec 21, 2010

• fixing index offset issue

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• adding checkPath functionality

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• cleanup warning

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• new demo for how to use alternate chem comp providers

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• more javadoc

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• more javadoc

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• more javadoc

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• new provider for caching all components in memory

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• now with support for download all of the chem comp definitions

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Commits on Dec 20, 2010

• Minor updates

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• JavaDoc changes

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Commits on Dec 19, 2010

• [maven-release-plugin] prepare for next development iteration

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• [maven-release-plugin] prepare release biojava-3.0-beta4

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• now deleting a file that gets generated during the junit tests as part of mvn clean. This is to prevent the mvn release plugin from complaining.

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• now deleting a file that gets generated during the junit tests as part of mvn clean. This is to prevent the mvn release plugin from complaining.

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• now deleting a file that get generate during the junit tests as part of mvn clean. This is to prevent the mvn release plugin from complaining.

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• javadoc

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• javadoc

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• fixing javadoc warning

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• fixing javadoc warning

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• fixing javadoc warning

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• fixing javadoc warning

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• changing internal ArrayList to TreeSet

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• more javadoc

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Commits on Dec 18, 2010

• fixing javadoc warning

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• fixing javadoc warning

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