Added nextflow.config and updated script

pditommaso · pditommaso · commit d4c9ea84de0c · 2018-02-25T21:37:37.000+01:00
diff --git a/.gitignore b/.gitignore
@@ -0,0 +1,3 @@
+.git
+.nextflow*
+work/
diff --git a/circle.yml b/circle.yml
@@ -12,4 +12,5 @@ general:
 test:
   override:
     - curl -fsSL get.nextflow.io | bash
-    - ./nextflow run . 
+    - ./nextflow run .
+    - ./nextflow run . -with-docker 
diff --git a/main.nf b/main.nf
@@ -5,9 +5,9 @@ cheers = Channel.from 'Bonjour', 'Ciao', 'Hello', 'Hola'
 
 process sayHello {
   input: 
-  val x from cheers
-  
-  """
-  echo '$x world!'
-  """
+    val x from cheers
+  script:
+    """
+    echo '$x world!'
+    """
 }
diff --git a/nextflow.config b/nextflow.config
@@ -0,0 +1 @@
+process.container = 'nextflow/bash'
