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  • Founder at Shaperk
  • Cyberjaya, Malaysia

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istiyakamin/README.md

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🧬 About Me

I'm Istiyak Amin Santo β€” a researcher and engineer working at the intersection of deep learning and biomedical imaging.

Currently completing my Master's by Research in AI (CGPA 4.0/4.0) at Multimedia University, Malaysia, I am pursuing a PhD focused on Advanced Deep Learning for Super-Resolution X-Nuclei MRI Reconstruction β€” a clinically significant challenge where AI can enable metabolic imaging of nuclei like Β²Β³Na, Β³ΒΉP, and ³⁹K that standard MRI scanners struggle to resolve.

My background bridges research-grade AI (transformers, CNNs, XAI, medical imaging, computational pathology) with production engineering (full-stack, DevOps, blockchain). I am an IEEE-indexed author, a Gold Medalist at iNVENTEX Innovation Exhibition 2025, and a Three Minute Thesis Finalist at MMU.

Vision: Build clinically trustworthy AI systems that make non-proton MRI viable for early diagnosis of cancer, neurodegeneration, and metabolic disease.


πŸ”¬ PhD Research

Topic:  Advanced Deep Learning Methods for Super-Resolution
        Data Reconstruction for X-Nuclei (Non-Proton) MRI Imaging

X-Nuclei MRI (Β²Β³Na, Β³ΒΉP, ⁷Li, ³⁹K) reveals biochemical and metabolic information that proton MRI cannot β€” but suffers from inherently low SNR, sparse k-space data, and prohibitively long acquisition times. My PhD directly addresses these bottlenecks using deep learning.

🧩 Research Pillars

Area Methods
Super-Resolution Reconstruction CNN, Vision Transformer & Diffusion-based SR for 3D MRI volumes
Sparse K-Space Learning Deep unrolling, compressed sensing + neural networks
Physics-Informed Deep Learning Embedding MRI relaxometry & k-space priors into network design
Multi-Modal Fusion Using ΒΉH proton MRI as structural guidance for X-Nuclei enhancement
Uncertainty Quantification Bayesian networks & ensembles for clinical-grade reliability
Explainability (XAI) Grad-CAM++, SHAP, Integrated Gradients for model interpretability

πŸ₯ Clinical Impact Areas

  • Oncology β€” Tumor metabolism mapping via Β³ΒΉP MRS
  • Neurology β€” Stroke penumbra & neurodegeneration via Β²Β³Na MRI
  • Cardiology β€” Myocardial viability & tissue energetics
  • Psychiatry β€” Lithium (⁷Li) distribution monitoring in bipolar disorder

πŸ“„ Publications

IEEE Scopus-Indexed | Under Review in Q1 Journals

Journal Papers (Under Review)

  • πŸ“˜ Tri-Objective Co-optimization of Waste-Cooking-Oil Biodiesel Using Machine Learning, NSGA-II, and Life-Cycle Assessment β€” Energy Reports
  • πŸ“˜ Risk-Aware Route Optimization for Waste Cooking Oil Collection β€” Waste Management

Conference Papers (Accepted β€” IEEE InCIT 2025, Scopus)

  • πŸ“— Travelling Salesman Problem: Classical to Quantum Era β€” A Comparative Review of Algorithms and Computational Complexity
  • πŸ“— Hybrid Deep Learning Framework for Multi-Class Breast Cancer Scoring Using Grad-CAM++
  • πŸ“— Real-Time Nuclei Classification and Allred Scoring in PR-IHC Stained Breast Cancer Histopathology Images

πŸ† Awards & Recognition

Award Year
πŸ₯‡ Gold Medal β€” iNVENTEX Innovation Exhibition (Biofuel LCA Toolkit) 2025
🎀 Finalist β€” Three Minute Thesis (3MT) Competition, MMU 2025
πŸŽ“ Fully Funded Government Linked University (GLU) Research Grant 2024–2025
πŸ“Š CGPA 4.0/4.0 β€” MSc by Research in Artificial Intelligence, MMU 2024–2025

βš™οΈ Technical Skills

πŸ€– AI & Deep Learning

PyTorch TensorFlow Keras PyTorch Lightning scikit-learn XGBoost LightGBM

πŸ₯ Medical Imaging & Explainable AI

Grad-CAM SHAP LIME Captum OpenCV DICOM

πŸ’» Engineering, Data & DevOps

Python Go PHP R Docker FastAPI MLflow AWS PostgreSQL Streamlit

βš›οΈ Quantum Computing

Qiskit PennyLane Cirq


πŸš€ Career Timeline

Role Organization Period
πŸŽ“ PhD Researcher (pursuing) Biomedical AI β€” X-Nuclei MRI Reconstruction 2026 β†’
πŸ”¬ Graduate Research Assistant Data Science Lab, Multimedia University, Malaysia Jul 2024 – Jun 2026
πŸ’Ό Full Stack Developer Royal Recruiter (Remote) Mar 2023 – May 2024
⛓️ Blockchain Developer King Apps Studio, Malaysia Dec 2021 – Jul 2022
🌐 Web Developer Chief ERP System Sep 2017 – Nov 2021

πŸŽ“ Education

Degree Institution Result
πŸ”¬ MSc by Research β€” Artificial Intelligence Multimedia University, Malaysia CGPA 4.0/4.0
πŸ’» BSc β€” Computer Science & Engineering Port City International University, Bangladesh CGPA 3.63/4.0
⚑ Diploma β€” Electronics Engineering Chittagong Polytechnic Institute CGPA 3.01/4.0

πŸ“Š GitHub Stats


🀝 Open to Collaboration

I am actively looking to connect with:

  • πŸ₯ Clinicians & Radiologists β€” seeking AI tools for MRI enhancement or pathology analysis
  • πŸ”¬ Medical Imaging Researchers β€” joint work on X-Nuclei MRI, histopathology AI, SR reconstruction
  • πŸš€ Healthtech Startups & VCs β€” building AI-powered diagnostic and imaging tools
  • πŸŽ“ PhD Programs & Labs β€” in computational pathology, medical image analysis, or biomedical AI

What I bring: Research rigor (IEEE publications, CGPA 4.0) + engineering depth (production systems, MLOps) + biomedical domain knowledge β€” a rare combination for a researcher at this stage.

πŸ“¬ Reach me: LinkedIn


"The best diagnostic tool is one the clinician never has to think about β€” it just works."

Pinned Loading

  1. awesome-x-nuclei-super-resolution awesome-x-nuclei-super-resolution Public

    A curated, community-driven resource for super-resolution reconstruction in X-nuclei MRI (²³Na, ¹³C, ³¹P, ¹⁹F)

  2. oservo/aiFi oservo/aiFi Public template

    A Multi Layer Perceptron (MLP) Artificial Neural Network (ANN) Framework Developed in C for Machine Learning (ML) and Deep Learning (DL)

    C 11 5

  3. SumonMSelim/server-automation SumonMSelim/server-automation Public archive

    Collection of shell scripts to make your life easier as a developer or system administrator.

    Shell 70 33

  4. number2word number2word Public

    An simple package to convert numbers to words in Golang. e.g. one thousand twenty four

    Go 11