Hello,
I noticed a few errors preventing the correct use of bounti

• Incorrect tmp path specification

In the config file fetpype/configs/segmentation/default.yaml:

singularity:
  cmd: "singularity exec -u --bind <singularity_mount> --bind /home/gmarti/tmp:/home/tmp_proc --nv
    <singularity_path>/bounti.sif
    bash /home/auto-proc-svrtk/auto-brain-bounti-segmentation-fetal.sh 
    <input_dir> <output_dir>"

Instead of home/gmarti/tmp the user should be able to specify its own tmp path.

• incorrect bash file specification in config file
  The correct path is /home/auto-proc-svrtk/scripts/auto-brain-bounti-segmentation-fetal.sh

Best, Fleur