Skip to content
Permalink

Comparing changes

Choose two branches to see what’s changed or to start a new pull request. If you need to, you can also or learn more about diff comparisons.

Open a pull request

Create a new pull request by comparing changes across two branches. If you need to, you can also . Learn more about diff comparisons here.
base repository: fetpype/fetpype
Failed to load repositories. Confirm that selected base ref is valid, then try again.
Loading
base: main
Choose a base ref
...
head repository: fetpype/fetpype
Failed to load repositories. Confirm that selected head ref is valid, then try again.
Loading
compare: dev
Choose a head ref
Checking mergeability… Don’t worry, you can still create the pull request.
  • 11 commits
  • 12 files changed
  • 1 contributor

Commits on Apr 24, 2025

  1. Add dHCP segmentation pipeline with gestational age support: 

    - Added gestational age parameter to segmentation functions and workflows.
- Implemented get_gestational_age utility to retrieve age from BIDS dataset.
- Updated YAML configurations for dHCP segmentation.
- Removed obsolete pipeline_fet_dhcp.py file.
    @GerardMJuan
    GerardMJuan committed Apr 24, 2025
    Configuration menu
    Copy the full SHA
    204439e View commit details
    Browse the repository at this point in the history

  2. Update segmentation pipeline to use dHCP and include bids_dir parameter

    @GerardMJuan
    GerardMJuan committed Apr 24, 2025
    Configuration menu
    Copy the full SHA
    39bd2f7 View commit details
    Browse the repository at this point in the history

  3. Remove get_gestational_age function from utils_bids.py

    @GerardMJuan
    GerardMJuan committed Apr 24, 2025
    Configuration menu
    Copy the full SHA
    c0b0f08 View commit details
    Browse the repository at this point in the history

Commits on Apr 28, 2025

  1. Refactor dhcp segmentation pipeline to use input_srr and gestational … 

    …age directly; update related configurations and remove deprecated bids_dir parameter.
    @GerardMJuan
    GerardMJuan committed Apr 28, 2025
    Configuration menu
    Copy the full SHA
    5a6b5d9 View commit details
    Browse the repository at this point in the history

Commits on May 5, 2025

  1. Update dhcp.yaml and full_pipeline.py for dHCP output handling and fi… 

    …x gestational age; modify utils_bids.py to support dHCP pipeline output in the Datasink; Add details to documentation
    @GerardMJuan
    GerardMJuan committed May 5, 2025
    Configuration menu
    Copy the full SHA
    eafef6b View commit details
    Browse the repository at this point in the history

  2. put back bounti as default in sg

    @GerardMJuan
    GerardMJuan committed May 5, 2025
    Configuration menu
    Copy the full SHA
    32dd915 View commit details
    Browse the repository at this point in the history

  3. Flake8

    @GerardMJuan
    GerardMJuan committed May 5, 2025
    Configuration menu
    Copy the full SHA
    8e4bd16 View commit details
    Browse the repository at this point in the history

Commits on Jul 21, 2025

  1. Add functions to validate participants.tsv compliance and locate BIDS… 

    … root directory

- Implemented `find_bids_root_for_participants` to traverse directories for participants.tsv.
- Added `check_participants_tsv_compliance` to ensure participants.tsv exists, is readable, and contains required columns.
- Integrated compliance check in segmentation workflows for dHCP pipeline.
    @GerardMJuan
    GerardMJuan committed Jul 21, 2025
    Configuration menu
    Copy the full SHA
    a898850 View commit details
    Browse the repository at this point in the history

  2. flake8 fixes

    @GerardMJuan
    GerardMJuan committed Jul 21, 2025
    Configuration menu
    Copy the full SHA
    c992400 View commit details
    Browse the repository at this point in the history

  3. Changed function as previous was too intrusive

    @GerardMJuan
    GerardMJuan committed Jul 21, 2025
    Configuration menu
    Copy the full SHA
    81d89fd View commit details
    Browse the repository at this point in the history

  4. Merge pull request #53 from GerardMJuan/dev 

    dHCP pipeline integration into /dev branch.
    @GerardMJuan
    GerardMJuan authored Jul 21, 2025
    Configuration menu
    Copy the full SHA
    a6b2bca View commit details
    Browse the repository at this point in the history
Loading