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main.cpp
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#include <pybind11/pybind11.h>
#include <pybind11/eigen.h>
#include <Eigen/LU>
#include <Eigen/SparseCore>
namespace py = pybind11;
#define STRINGIFY(x) #x
#define MACRO_STRINGIFY(x) STRINGIFY(x)
int add(int i, int j) {
return i + j;
}
Eigen::SparseMatrix<double> accord(
Eigen::Ref<Eigen::MatrixXd, 0, Eigen::Stride<Eigen::Dynamic, Eigen::Dynamic>> S,
Eigen::Ref<Eigen::MatrixXd, 0, Eigen::Stride<Eigen::Dynamic, Eigen::Dynamic>> LambdaMat,
double lam2,
double epstol,
int maxitr,
double tau,
bool penalize_diag,
Eigen::Ref<Eigen::VectorXd> hist_norm_diff,
Eigen::Ref<Eigen::VectorXd> hist_hn
);
PYBIND11_MODULE(_gaccord, m) {
m.doc() = R"pbdoc(
Pybind11 example plugin
-----------------------
.. currentmodule:: gaccord
.. autosummary::
:toctree: _generate
add
subtract
)pbdoc";
m.def("add", &add, R"pbdoc(
Add two numbers
Some other explanation about the add function.
)pbdoc");
m.def("subtract", [](int i, int j) { return i - j; }, R"pbdoc(
Subtract two numbers
Some other explanation about the subtract function.
)pbdoc");
m.def(
"accord",
&accord,
R"pbdoc(
ACCORD, cov variant
Column-major sparse matrix
)pbdoc");
#ifdef VERSION_INFO
m.attr("__version__") = MACRO_STRINGIFY(VERSION_INFO);
#else
m.attr("__version__") = "dev";
#endif
}