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Pull requests: biopython/biopython
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Fix PDBList URL construction for non-RCSB Mirrors
#5157
opened Feb 4, 2026 by
kirandharmar867-maker
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Feat: Add NetworkX adapter for PDB NeighborSearch results
#5155
opened Jan 25, 2026 by
dipankatanu
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Fix residue depth subprocess : Modernize process execution in ResidueDepth using subprocess.run
#5150
opened Jan 25, 2026 by
dipankatanu
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Fix
Entrez.Parser.DataHandler URL security check continuity (related to #5109 and #5114)
#5148
opened Jan 25, 2026 by
hartwork
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3 tasks done
Correctly clean up files generated by the Phylo tutorial.
#5147
opened Jan 23, 2026 by
xelandernt
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3 tasks done
Fix Numpy 2.4 compatibility in PDB/vectors.py
#5138
opened Jan 9, 2026 by
Augustin-Zidek
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3 tasks done
Added PERMISSIVE argument to MMCIFParser as in PDBParser.
#5134
opened Jan 6, 2026 by
piecole
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3 tasks done
Added depreciation error to MMTFParser.get_structure_from_url since RCSB no longer serves MMTF
#5129
opened Jan 2, 2026 by
piecole
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3 tasks done
make sure that polar_angle is initialized even if the radius is zero,…
#5127
opened Dec 26, 2025 by
mdehoon
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3 tasks done
chore: add type annotation to Bio/File.py
#5088
opened Oct 24, 2025 by
szabgab
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3 tasks done
Complete C acceleration for melting temperature calculations
#5085
opened Oct 15, 2025 by
rhowardstone
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8 tasks done
Add support for terminal_columns in Alignment formatting, issue 5035
#5070
opened Sep 19, 2025 by
data2code
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1 task
Added subpopulation function and validation logic
#5042
opened Aug 16, 2025 by
timlee-bioinf
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3 tasks
Add SeqIO read/write support for NCBI 5-column tab-delimited feature tables
#5032
opened Jul 21, 2025 by
michaelfm1211
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Draft
3 tasks done
Replaced print with warn/stderrs in NCBIXML.py
#5030
opened Jul 17, 2025 by
head-ease08
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3 tasks done
Add option to ignore N-/C-terminus effects in isoelectric point calculation
#5022
opened Jun 27, 2025 by
FriedLabJHU
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1 task
Accelerated motif search algorithms on dna sequences
#5016
opened Jun 19, 2025 by
quim6
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3 tasks done
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