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wiki/BioJava:Cookbook:Locations:Circular.md

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@@ -38,6 +38,12 @@ and install BioJava](BioJava:GetStarted "wikilink")" link on the main
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page and read the section on cvs. biojava-live BioJava version 1.3 (when
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released) will be adequate.**
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Since BioJava 1.5+, you may want to consider using
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[RichLocation](http://www.biojava.org/docs/api1.8/org/biojavax/bio/seq/RichLocation.html)
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from the [BioJavax](BioJava:BioJavaXDocs "wikilink") extension, which
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provides several tools to work with circular locations and has been
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extensively tested.
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<java> import org.biojava.bio.seq.\*; import org.biojava.bio.symbol.\*;
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public class SpecifyCircular {

wiki/BioJava:Cookbook:Locations:Circular.mediawiki

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'''NOTE: due to bugs in earlier versions of BioJava this recipe will give strange results unless you are working off a fairly recent version of BioJava. To get the most up to date version follow the "[[BioJava:GetStarted|How do I get and install BioJava]]" link on the main page and read the section on cvs. biojava-live BioJava version 1.3 (when released) will be adequate.'''
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Since BioJava 1.5+, you may want to consider using [http://www.biojava.org/docs/api1.8/org/biojavax/bio/seq/RichLocation.html RichLocation] from the [[BioJava:BioJavaXDocs|BioJavax]] extension, which provides several tools to work with circular locations and has been extensively tested.
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<java>
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import org.biojava.bio.seq.*;
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import org.biojava.bio.symbol.*;

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