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_wikis/BOSC2008_Abstract.md

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@@ -170,3 +170,33 @@ started to develop a mmcif parser
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by Andreas.Prlic (Using name ‘andreas’) on 2008-04-28 07:27 (11 days
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**Version 1.6 release announcement to biojava-dev and biojava-l**
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Date: Sun, 13 Apr 2008 19:02:41 +0100
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From: Andreas Prlic
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To: biojava-dev at biojava.org, biojava-l at biojava.org
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Subject: [Biojava-dev] biojava 1.6 released
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Biojava 1.6 has been released and is available from <http://>
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biojava.org/wiki/BioJava:Download
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Biojava 1.6 offers more functionality and stability over the previous
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official releases. BioJava now depends on Java 1.5+. We highly recommend
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you to upgrade as soon as possible.
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In detail, the phylo package org.biojavax.bio.phylo was improved and
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expanded by our GSOC'07 student Boh-Yun Lee. It now contains fully-
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functional Nexus and Phylip parsers, and tools for calculating UPGMA and
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Neighbour Joining, Jukes-Kantor and Kimura Two Parameter, and MP. It
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uses JGraphT to represent parsed trees.
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The PDB file parser was improved by Jules Jacobsen for better dealing
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with PDB header records. Andreas Draeger provided several patches for
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improving the Genetic Algorithm modules. Additionally this release
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contains numerous bug fixes and documentation improvements.
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Thanks to the entire biojava community for making this possible!
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Happy Biojava-ing,
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Andreas

_wikis/BOSC2008_Abstract.mediawiki

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started to develop a mmcif parser
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by Andreas.Prlic (Using name ‘andreas’) on 2008-04-28 07:27 (11 days ago)
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by Andreas.Prlic (Using name ‘andreas’) on 2008-04-28 07:27 (11 days ago)
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'''Version 1.6 release announcement to biojava-dev and biojava-l'''
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Date: Sun, 13 Apr 2008 19:02:41 +0100<br/>
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From: Andreas Prlic<br/>
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To: biojava-dev at biojava.org, biojava-l at biojava.org<br/>
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Subject: [Biojava-dev] biojava 1.6 released<br/>
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Biojava 1.6 has been released and is available from http://
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biojava.org/wiki/BioJava:Download
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Biojava 1.6 offers more functionality and stability over the previous
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official releases. BioJava now depends on Java 1.5+. We highly
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recommend you to upgrade as soon as possible.
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In detail, the phylo package org.biojavax.bio.phylo was improved and
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expanded by our GSOC'07 student Boh-Yun Lee. It now contains fully-
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functional Nexus and Phylip parsers, and tools for calculating UPGMA
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and Neighbour Joining, Jukes-Kantor and Kimura Two Parameter, and MP.
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It uses JGraphT to represent parsed trees.
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The PDB file parser was improved by Jules Jacobsen for better dealing
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with PDB header records. Andreas Draeger provided several patches for
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improving the Genetic Algorithm modules. Additionally this release
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contains numerous bug fixes and documentation improvements.
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Thanks to the entire biojava community for making this possible!
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Happy Biojava-ing,
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Andreas

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