/* Example: How to parse a local file */

andreasprlic · andreasprlic · commit af64d399d430 · 2016-04-08T23:00:44.000-07:00
diff --git a/wiki/BioJava:CookBook:PDB:read3.0.md b/wiki/BioJava:CookBook:PDB:read3.0.md
@@ -258,11 +258,11 @@ Example: How to parse a local file
 
 This example shows how to read a PDB file from your file system, obtain
 a [Structure
-object](http://www.biojava.org/docs/api/org/biojava/bio/structure/Structure.html)
+object](http://www.biojava.org/docs/api/org/biojava/nbio/structure/Structure.html)
 and iterate over the
-[Groups](http://www.biojava.org/docs/api/org/biojava/bio/structure/Group.html)
+[Groups](http://www.biojava.org/docs/api/org/biojava/nbio/structure/Group.html)
 that are contained in the file. For more examples of how to access the
-[Atoms](http://www.biojava.org/docs/api/org/biojava/bio/structure/Atom.html)
+[Atoms](http://www.biojava.org/docs/api/org/biojava/nbio/structure/Atom.html)
 please go to <BioJava:CookBook:PDB:atoms>. For more info on how the
 parser deals with SEQRES and ATOM records please see
 <BioJava:CookBook:PDB:seqres> <java>
diff --git a/wiki/BioJava:CookBook:PDB:read3.0.mediawiki b/wiki/BioJava:CookBook:PDB:read3.0.mediawiki
@@ -219,8 +219,8 @@ public void loadStructureFromCache(){
 
 == Example: How to parse a local file ==
 
-This example shows how to read a PDB file from your file system, obtain a [http://www.biojava.org/docs/api/org/biojava/bio/structure/Structure.html Structure object] and iterate over 
-the [http://www.biojava.org/docs/api/org/biojava/bio/structure/Group.html Groups] that are contained in the file. For more examples of how to access the [http://www.biojava.org/docs/api/org/biojava/bio/structure/Atom.html Atoms] 
+This example shows how to read a PDB file from your file system, obtain a [http://www.biojava.org/docs/api/org/biojava/nbio/structure/Structure.html Structure object] and iterate over 
+the [http://www.biojava.org/docs/api/org/biojava/nbio/structure/Group.html Groups] that are contained in the file. For more examples of how to access the [http://www.biojava.org/docs/api/org/biojava/nbio/structure/Atom.html Atoms] 
 please go to [[BioJava:CookBook:PDB:atoms]]. For more info on how the parser deals with SEQRES and ATOM records please
 see  [[BioJava:CookBook:PDB:seqres]] 
 <java>
