/* How can I get the list of supported protein modifications? */

jjgao · andreasprlic · commit a35495f43507 · 2016-04-09T10:59:33.000-07:00
diff --git a/_wikis/BioJava:CookBook3:SupportedProtMod.md b/_wikis/BioJava:CookBook3:SupportedProtMod.md
@@ -6,7 +6,7 @@ How can I get the list of supported protein modifications?
 ----------------------------------------------------------
 
 The protmod module contains [an XML
-file](http://code.open-bio.org/svnweb/index.cgi/biojava/browse/biojava-live/trunk/biojava3-protmod/src/main/resources/org/biojava3/protmod),
+file](http://code.open-bio.org/svnweb/index.cgi/biojava/browse/biojava-live/trunk/biojava3-modfinder/src/main/resources/org/biojava3/protmod),
 defining a list of protein modifications, retrieved from [Protein Data
 Bank Chemical Component Dictrionary](http://www.wwpdb.org/ccd.html),
 [RESID](http://www.ebi.ac.uk/RESID/), and
diff --git a/_wikis/BioJava:CookBook3:SupportedProtMod.mediawiki b/_wikis/BioJava:CookBook3:SupportedProtMod.mediawiki
@@ -1,5 +1,5 @@
 ==How can I get the list of supported protein modifications?==
-The protmod module contains [http://code.open-bio.org/svnweb/index.cgi/biojava/browse/biojava-live/trunk/biojava3-protmod/src/main/resources/org/biojava3/protmod an XML file], defining a list of protein modifications, retrieved from [http://www.wwpdb.org/ccd.html Protein Data Bank Chemical Component Dictrionary], [http://www.ebi.ac.uk/RESID/ RESID], and [http://psidev.sourceforge.net/mod/ PSI-MOD]. It contains many common modifications such glycosylation, phosphorylation, acelytation, methylation, etc. Crosslinks are also included, such disulfide bonds and iso-peptide bonds. 
+The protmod module contains [http://code.open-bio.org/svnweb/index.cgi/biojava/browse/biojava-live/trunk/biojava3-modfinder/src/main/resources/org/biojava3/protmod an XML file], defining a list of protein modifications, retrieved from [http://www.wwpdb.org/ccd.html Protein Data Bank Chemical Component Dictrionary], [http://www.ebi.ac.uk/RESID/ RESID], and [http://psidev.sourceforge.net/mod/ PSI-MOD]. It contains many common modifications such glycosylation, phosphorylation, acelytation, methylation, etc. Crosslinks are also included, such disulfide bonds and iso-peptide bonds. 
 
 The protmod maintains a registry of supported protein modifications. The list of protein modifications contained in the XML file will be automatically loaded. You can [[BioJava:CookBook3:AddProtMod | define and register a new protein modification]] if it has not been defined in the XML file. From the protein modification registry, a user can retrieve
 * all protein modifications,
