/* Weight Matrices and Dynamic Programming */

guedes · andreasprlic · commit a0523f13c412 · 2016-04-09T10:57:18.000-07:00
diff --git a/_wikis/BioJava:CookBook1.7.md b/_wikis/BioJava:CookBook1.7.md
@@ -206,12 +206,11 @@ How Do I....?
 -   |How do I set up a custom HMM? (Link to
     Tutorial?? --[Guedes](User:Guedes "wikilink") 11:43, 8 February 2006
     (EST) )
--   [How do I generate a pair-wise
-    alignment](BioJava:CookBook:DP:PairWise "wikilink") with a Hidden
-    Markov Model?
--   [How do I generate a global or local
-    alignment](BioJava:CookBook:DP:PairWise2 "wikilink") with the
-    Needleman-Wunsch- or the Smith-Waterman-algorithm?
+-   [How do I generate a pair-wise alignment with a Hidden Markov
+    Model](BioJava:CookBook:DP:PairWise "wikilink")?
+-   [How do I generate a global or local alignment with the
+    Needleman-Wunsch- or the
+    Smith-Waterman-algorithm](BioJava:CookBook:DP:PairWise2 "wikilink")?
 
 ### User Interfaces
 
diff --git a/_wikis/BioJava:CookBook1.7.mediawiki b/_wikis/BioJava:CookBook1.7.mediawiki
@@ -112,8 +112,8 @@ Click here to search [http://scholar.google.com/scholar?q=biojava Google Scholar
 * [[BioJava:CookBook:DP:WeightMatrix|How do I use a WeightMatrix to find a motif]]?
 * [[BioJava:CookBook:DP:HMM|How do I make a HMMER like profile HMM]]?
 * |How do I set up a custom HMM? (Link to Tutorial?? --[[User:Guedes|Guedes]] 11:43, 8 February 2006 (EST) )
-* [[BioJava:CookBook:DP:PairWise|How do I generate a pair-wise alignment]] with a Hidden Markov Model?
-* [[BioJava:CookBook:DP:PairWise2|How do I generate a global or local alignment]] with the Needleman-Wunsch- or the Smith-Waterman-algorithm?
+* [[BioJava:CookBook:DP:PairWise|How do I generate a pair-wise alignment with a Hidden Markov Model]]?
+* [[BioJava:CookBook:DP:PairWise2|How do I generate a global or local alignment with the Needleman-Wunsch- or the Smith-Waterman-algorithm]]?
 
 === User Interfaces ===
 
