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_wikis/BioJava:BioJavaInside.md

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- [1](http://lajolla.sourceforge.net) LaJolla - Structural alignment
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of RNA and proteins using an index structure for fast alignment of
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- [LaJolla](http://lajolla.sourceforge.net) Structural alignment of
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RNA and proteins using an index structure for fast alignment of
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thousands of structures. Including an easy to use command line
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interface. Open source at Sourceforge.
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_wikis/BioJava:BioJavaInside.mediawiki

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* [http://www.bioinf.jku.at/software/LSTM_protein/ jLSTM] "Long Short-Term Memory" for protein classification
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* [http://lajolla.sourceforge.net] LaJolla - Structural alignment of RNA and proteins using an index structure for fast alignment of thousands of structures. Including an easy to use command line interface. Open source at Sourceforge.
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* [http://lajolla.sourceforge.net LaJolla] Structural alignment of RNA and proteins using an index structure for fast alignment of thousands of structures. Including an easy to use command line interface. Open source at Sourceforge.
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== Publications ==
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BioJava has been used in the following publications. If you know of other publications please add them.

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