/* How can make a motif into a regular expression? */

Dexter riley · andreasprlic · commit 9303376afa2b · 2016-04-09T10:57:31.000-07:00
diff --git a/_wikis/BioJava:Cookbook:Sequence:Regex.md b/_wikis/BioJava:Cookbook:Sequence:Regex.md
@@ -86,7 +86,7 @@ public class MotifLister{
 `   BufferedReader input = new BufferedReader(isr);`
 
 `   try{`  
-`     si = (SequenceIterator)SeqIOTools.fileToBiojava("fasta", "type", input);`
+`     si = (SequenceIterator)SeqIOTools.fileToBiojava("fasta", type, input);`
 
 `     //for each sequence`  
 `     while (si.hasNext()){`  
diff --git a/_wikis/BioJava:Cookbook:Sequence:Regex.mediawiki b/_wikis/BioJava:Cookbook:Sequence:Regex.mediawiki
@@ -80,7 +80,7 @@ public class MotifLister{
     BufferedReader input = new BufferedReader(isr);
 
     try{
-      si = (SequenceIterator)SeqIOTools.fileToBiojava("fasta", "type", input);
+      si = (SequenceIterator)SeqIOTools.fileToBiojava("fasta", type, input);
 
       //for each sequence
       while (si.hasNext()){
