creating new page

andreasprlic · andreasprlic · commit 9300625f7c3f · 2016-04-09T10:59:35.000-07:00
diff --git a/_wikis/Algorithm_Java_port.md b/_wikis/Algorithm_Java_port.md
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+---
+title: Algorithm Java port
+---
+
+Possible Java ports of Algorithms
+=================================
+
+We would be interested in having Java ports of the following algorithms:
+
+`- Blast`  
+`- Hmmer3`  
+`- Dssp (some parts already available)`
+
+### Couple of tools that might be useful for porting to Java
+
+This software is available for $119 with a 15 day return.
+<http://www.tangiblesoftwaresolutions.com/Product_Details/CPlusPlus_to_Java_>
+Converter\_Details.html?gclid=CIO3xLrYjK4CFQ2R7Qod2gldgg It won't do
+perfect code but will get you close.
+
+This is also an interesting approach <http://code.google.com/p/cibyl/>
+where I can't imagine would work in a I/O or computationally intensive
+application. Converting ASM to Bytecode takes out all the parsing
+headaches. The JIT should still be able to take over and optimize.
+
+I have used this before and works reasonably well.
+<http://tech.novosoft-us.com/product_c2j.jsp> You get a Jar file that
+maps all the ansi C libraries.
diff --git a/_wikis/Algorithm_Java_port.mediawiki b/_wikis/Algorithm_Java_port.mediawiki
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+=Possible Java ports of Algorithms=
+
+We would be interested in having Java ports of the following algorithms:
+
+ - Blast
+ - Hmmer3
+ - Dssp (some parts already available)
+
+
+=== Couple of tools that might be useful for porting to Java ===
+
+This software is available for $119 with a 15 day return.
+http://www.tangiblesoftwaresolutions.com/Product_Details/CPlusPlus_to_Java_
+Converter_Details.html?gclid=CIO3xLrYjK4CFQ2R7Qod2gldgg
+It won't do perfect code but will get you close.
+
+This is also an interesting approach http://code.google.com/p/cibyl/ where
+I can't imagine would work in a I/O or computationally intensive
+application. Converting ASM to Bytecode takes out all the parsing
+headaches. The JIT should still be able to take over and optimize.
+
+I have used this before and works reasonably well.
+http://tech.novosoft-us.com/product_c2j.jsp You get a Jar file that maps
+all the ansi C libraries.
