Updating to biojava 4

Jose Manuel Duarte · andreasprlic · commit 8a582b66887c · 2016-03-19T19:17:51.000-07:00
diff --git a/wiki/BioJava:CookBook3:MSA.md b/wiki/BioJava:CookBook3:MSA.md
@@ -7,16 +7,16 @@ How to create a Multiple Sequence Alignment in BioJava
 
 <java>
 
-package org.biojava3.alignment;
+package org.biojava.nbio.alignment;
 
 import java.net.URL; import java.util.ArrayList; import java.util.List;
 
-import org.biojava3.alignment.Alignments; import
-org.biojava3.alignment.template.Profile; import
-org.biojava3.core.sequence.ProteinSequence; import
-org.biojava3.core.sequence.compound.AminoAcidCompound; import
-org.biojava3.core.sequence.io.FastaReaderHelper; import
-org.biojava3.core.util.ConcurrencyTools;
+import org.biojava.nbio.alignment.Alignments; import
+org.biojava.nbio.alignment.template.Profile; import
+org.biojava.nbio.core.sequence.ProteinSequence; import
+org.biojava.nbio.core.sequence.compound.AminoAcidCompound; import
+org.biojava.nbio.core.sequence.io.FastaReaderHelper; import
+org.biojava.nbio.core.util.ConcurrencyTools;
 
 public class CookbookMSA {
 
diff --git a/wiki/BioJava:CookBook3:MSA.mediawiki b/wiki/BioJava:CookBook3:MSA.mediawiki
@@ -2,18 +2,18 @@
 
 <java>
 
-package org.biojava3.alignment;
+package org.biojava.nbio.alignment;
 
 import java.net.URL;
 import java.util.ArrayList;
 import java.util.List;
 
-import org.biojava3.alignment.Alignments;
-import org.biojava3.alignment.template.Profile;
-import org.biojava3.core.sequence.ProteinSequence;
-import org.biojava3.core.sequence.compound.AminoAcidCompound;
-import org.biojava3.core.sequence.io.FastaReaderHelper;
-import org.biojava3.core.util.ConcurrencyTools;
+import org.biojava.nbio.alignment.Alignments;
+import org.biojava.nbio.alignment.template.Profile;
+import org.biojava.nbio.core.sequence.ProteinSequence;
+import org.biojava.nbio.core.sequence.compound.AminoAcidCompound;
+import org.biojava.nbio.core.sequence.io.FastaReaderHelper;
+import org.biojava.nbio.core.util.ConcurrencyTools;
 
 public class CookbookMSA {
 
