Updating to biojava 4

josemduarte · andreasprlic · commit 8a2d96561783 · 2016-04-09T11:00:01.000-07:00
diff --git a/_wikis/BioJava:CookBook3:ModFinder.md b/_wikis/BioJava:CookBook3:ModFinder.md
@@ -46,10 +46,10 @@ Example: identify phosphorylation sites in a structure
 Demo code to run the above methods
 ----------------------------------
 
-<java> import org.biojava.bio.structure.ResidueNumber; import
-org.biojava.bio.structure.Structure; import
-org.biojava.bio.structure.io.PDBFileReader; import
-org.biojava3.protmod.structure.ProteinModificationIdentifier;
+<java> import org.biojava.nbio.structure.ResidueNumber; import
+org.biojava.nbio.structure.Structure; import
+org.biojava.nbio.structure.io.PDBFileReader; import
+org.biojava.nbio.protmod.structure.ProteinModificationIdentifier;
 
 public static void main(String[] args) {
 
diff --git a/_wikis/BioJava:CookBook3:ModFinder.mediawiki b/_wikis/BioJava:CookBook3:ModFinder.mediawiki
@@ -31,10 +31,10 @@ List<ResidueNumber> identifyPhosphosites(Structure struc) {
 
 ==Demo code to run the above methods==
 <java>
-import org.biojava.bio.structure.ResidueNumber;
-import org.biojava.bio.structure.Structure;
-import org.biojava.bio.structure.io.PDBFileReader;
-import org.biojava3.protmod.structure.ProteinModificationIdentifier;
+import org.biojava.nbio.structure.ResidueNumber;
+import org.biojava.nbio.structure.Structure;
+import org.biojava.nbio.structure.io.PDBFileReader;
+import org.biojava.nbio.protmod.structure.ProteinModificationIdentifier;
 
 public static void main(String[] args) {
 	try {
