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‎_wikis/BioJava3_Eclipse_with_SVN.md‎

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@@ -9,14 +9,15 @@ Prerequisite
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<!-- -->
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- Make sure you have Java 1.6 installed. (if you are on oSX 10.4.x
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install [soylatte](http://landonf.bikemonkey.org/static/soylatte/)
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- Make sure you have Java 1.6 installed. (if you are on OSX 10.4.x,
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install [soylatte](http://landonf.bikemonkey.org/static/soylatte/))
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<!-- -->
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- Install the [m2eclipse](http://m2eclipse.sonatype.org/) Maven
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eclipse plugin. Be sure to include SCM integration, offered through
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the m2eclipse-extras package.
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- Install the [m2eclipse](http://eclipse.org/m2e/) Maven eclipse
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plugin (previously hosted by
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[Sonatype](http://m2eclipse.sonatype.org/)). Be sure to include SCM
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integration, offered through the m2eclipse-extras package.
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<!-- -->
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project
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Details for specific Eclipse Versions
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=====================================
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=
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-------------------------------------
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### Update for Eclipse Helios SR2 (May 2011)
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[1](http://www.shareyourwork.org/roller/ralphsjavablog/entry/eclipse_indigo_maven_and_svn)
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--[Andreas](User:Andreas "wikilink") 04:43, 30 August 2011 (UTC)
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Anonymous access with Git
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-------------------------
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In the past, anonymous access to BioJava source code via SVN has been
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problematic. Alternatively, you can retrieve the source code from the
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read-only [BioJava github mirror](https://github.com/biojava) using
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Eclipse.
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*Requirements:*
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- Java 6 (1.6) JDK
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- Eclipse Indigo (3.7) or greater
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- m2eclipse (Eclipse [update
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site](http://download.eclipse.org/technology/m2e/releases))
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- EGit (pre-installed with Indigo)
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- Maven SCM Handler for EGit (m2e-egit) from Eclipse Marketplace
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*Additional setup:*
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- Edit your eclipse.ini file to use the Java JDK as your VM
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(instructions above, required for Maven)
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- If necessary, [set the HOME environment
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variable](http://wiki.eclipse.org/EGit/User_Guide#Setting_up_the_Home_Directory_on_Windows)
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(required for EGit)
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*Import the BioJava Maven project from Git ([StackOverflow
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answer](http://stackoverflow.com/questions/4869815/importing-a-maven-project-into-eclipse-from-git)):*
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- Open the Git Repository perspective
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- Clone the BioJava git repository
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(http://github.com/biojava/biojava.git)
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- Expand the cloned repository, right-click "Working directory", and
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pick "Import Maven Projects..."
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- Open the Java perspective
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- Select all of the projects, right-click and choose "Team \> Share
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Project", select "Git", and check the "Use or create repository in
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parent folder of project" box
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‎_wikis/BioJava3_Eclipse_with_SVN.mediawiki‎

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* Make sure you have a copy of the latest eclipse (Galileo)
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* Make sure you have Java 1.6 installed. (if you are on oSX 10.4.x install [http://landonf.bikemonkey.org/static/soylatte/ soylatte]
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* Make sure you have Java 1.6 installed. (if you are on OSX 10.4.x, install [http://landonf.bikemonkey.org/static/soylatte/ soylatte])
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* Install the [http://m2eclipse.sonatype.org/ m2eclipse] Maven eclipse plugin. Be sure to include SCM integration, offered through the m2eclipse-extras package.
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* Install the [http://eclipse.org/m2e/ m2eclipse] Maven eclipse plugin (previously hosted by [http://m2eclipse.sonatype.org/ Sonatype]). Be sure to include SCM integration, offered through the m2eclipse-extras package.
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* Install the [http://subclipse.tigris.org/ subclipse] plugin for subversion (latest version: 1.6)
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* In the SVN Repository Exploring view: Right click on the folder <i>/biojava/biojava-live/trunk</i> and select Check Out as Maven project
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= Details for specific Eclipse Versions ==
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== Details for specific Eclipse Versions ==
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=== Update for Eclipse Helios SR2 (May 2011) ===
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A useful blog article providing more help for how to install Maven is here: [http://www.shareyourwork.org/roller/ralphsjavablog/entry/eclipse_indigo_maven_and_svn]
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--[[User:Andreas|Andreas]] 04:43, 30 August 2011 (UTC)
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--[[User:Andreas|Andreas]] 04:43, 30 August 2011 (UTC)
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== Anonymous access with Git ==
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In the past, anonymous access to BioJava source code via SVN has been problematic. Alternatively, you can retrieve the source code from the read-only [https://github.com/biojava BioJava github mirror] using Eclipse.
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''Requirements:''
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* Java 6 (1.6) JDK
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* Eclipse Indigo (3.7) or greater
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* m2eclipse (Eclipse [http://download.eclipse.org/technology/m2e/releases update site])
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* EGit (pre-installed with Indigo)
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* Maven SCM Handler for EGit (m2e-egit) from Eclipse Marketplace
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''Additional setup:''
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* Edit your eclipse.ini file to use the Java JDK as your VM (instructions above, required for Maven)
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* If necessary, [http://wiki.eclipse.org/EGit/User_Guide#Setting_up_the_Home_Directory_on_Windows set the HOME environment variable] (required for EGit)
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''Import the BioJava Maven project from Git ([http://stackoverflow.com/questions/4869815/importing-a-maven-project-into-eclipse-from-git StackOverflow answer]):''
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* Open the Git Repository perspective
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* Clone the BioJava git repository (http://github.com/biojava/biojava.git)
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* Expand the cloned repository, right-click "Working directory", and pick "Import Maven Projects..."
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* Open the Java perspective
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* Select all of the projects, right-click and choose "Team > Share Project", select "Git", and check the "Use or create repository in parent folder of project" box

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