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markjschreiberandreasprlic
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/* When File Parsers Go Wrong */
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_wikis/BioJava:BioJavaXDocs.md

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@@ -1254,8 +1254,8 @@ The idea is that you do something like this (the example debugs the
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parsing of a FASTA file):
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<java> Namespace ns = RichObjectFactory.getDefaultNamespace();
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InputStream is = new FileInputStream("myFastaFile.fasta"); FASTAFormat
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format = new FASTAFormat();
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InputStream is = new FileInputStream("myFastaFile.fasta"); FastaFormat
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format = new FastaFormat();
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DebuggingRichSeqIOListener debug = new DebuggingRichSeqIOListener(is);
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BufferedReader br = new BufferedReader(new InputStreamReader(debug));

_wikis/BioJava:BioJavaXDocs.mediawiki

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@@ -1392,7 +1392,7 @@ The idea is that you do something like this (the example debugs the parsing of a
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<java>
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Namespace ns = RichObjectFactory.getDefaultNamespace();
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InputStream is = new FileInputStream("myFastaFile.fasta");
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FASTAFormat format = new FASTAFormat();
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FastaFormat format = new FastaFormat();
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DebuggingRichSeqIOListener debug = new DebuggingRichSeqIOListener(is);
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BufferedReader br = new BufferedReader(new InputStreamReader(debug));

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