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lines changed Original file line number Diff line number Diff line change @@ -1254,8 +1254,8 @@ The idea is that you do something like this (the example debugs the
12541254parsing of a FASTA file):
12551255
12561256<java > Namespace ns = RichObjectFactory.getDefaultNamespace();
1257- InputStream is = new FileInputStream("myFastaFile.fasta"); FASTAFormat
1258- format = new FASTAFormat ();
1257+ InputStream is = new FileInputStream("myFastaFile.fasta"); FastaFormat
1258+ format = new FastaFormat ();
12591259
12601260DebuggingRichSeqIOListener debug = new DebuggingRichSeqIOListener(is);
12611261BufferedReader br = new BufferedReader(new InputStreamReader(debug));
Original file line number Diff line number Diff line change @@ -1392,7 +1392,7 @@ The idea is that you do something like this (the example debugs the parsing of a
13921392<java>
13931393Namespace ns = RichObjectFactory.getDefaultNamespace();
13941394InputStream is = new FileInputStream("myFastaFile.fasta");
1395- FASTAFormat format = new FASTAFormat ();
1395+ FastaFormat format = new FastaFormat ();
13961396
13971397DebuggingRichSeqIOListener debug = new DebuggingRichSeqIOListener(is);
13981398BufferedReader br = new BufferedReader(new InputStreamReader(debug));
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