update to 1.8

Gwaldon · andreasprlic · commit 3a3eb0f4f17b · 2016-03-18T23:29:01.000-07:00
diff --git a/wiki/BioJava:Cookbook:Alphabets:CrossProduct.md b/wiki/BioJava:Cookbook:Alphabets:CrossProduct.md
@@ -6,29 +6,29 @@ How do I make a CrossProductAlphabet such as a codon Alphabet
 -------------------------------------------------------------
 
 CrossProductAlphabets result from the multiplication of other
-[Alphabets](http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Alphabet.html).
+[Alphabets](http://www.biojava.org/docs/api1.8/org/biojava/bio/symbol/Alphabet.html).
 CrossProductAlphabets are used to wrap up 2 or more
-[Symbols](http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Symbol.html)into
+[Symbols](http://www.biojava.org/docs/api1.8/org/biojava/bio/symbol/Symbol.html)into
 a single "cross product"
-[Symbol](http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Symbol.html).
+[Symbol](http://www.biojava.org/docs/api1.8/org/biojava/bio/symbol/Symbol.html).
 For example using a 3 way cross of the [DNA](wp:DNA "wikilink") alphabet
 you could wrap a [codon](wp:codon "wikilink") as a
-[Symbol](http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Symbol.html).
+[Symbol](http://www.biojava.org/docs/api1.8/org/biojava/bio/symbol/Symbol.html).
 You could then count those [codon](wp:codon "wikilink")
-[Symbols](http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Symbol.html)
+[Symbols](http://www.biojava.org/docs/api1.8/org/biojava/bio/symbol/Symbol.html)
 in a
-[Count](http://www.biojava.org/docs/api14/org/biojava/bio/dist/Count.html)
+[Count](http://www.biojava.org/docs/api1.8/org/biojava/bio/dist/Count.html)
 or you could used them in a
-[Distribution](http://www.biojava.org/docs/api14/org/biojava/bio/dist/Distribution.html).
+[Distribution](http://www.biojava.org/docs/api1.8/org/biojava/bio/dist/Distribution.html).
 
 CrossProductAlphabets can be created by name (if the component
-[Alphabets](http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Alphabet.html)
+[Alphabets](http://www.biojava.org/docs/api1.8/org/biojava/bio/symbol/Alphabet.html)
 are registered in the
-[AlphabetManager](http://www.biojava.org/docs/api14/org/biojava/bio/symbol/AlphabetManager.html))
+[AlphabetManager](http://www.biojava.org/docs/api1.8/org/biojava/bio/symbol/AlphabetManager.html))
 or by making a list of the desired
-[Alphabets](http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Alphabet.html)
+[Alphabets](http://www.biojava.org/docs/api1.8/org/biojava/bio/symbol/Alphabet.html)
 and creating the
-[Alphabet](http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Alphabet.html)
+[Alphabet](http://www.biojava.org/docs/api1.8/org/biojava/bio/symbol/Alphabet.html)
 from the
 [List](http://java.sun.com/j2se/1.4.2/docs/api/java/util/List.html).
 Both approaches are shown in the example below.
diff --git a/wiki/BioJava:Cookbook:Alphabets:CrossProduct.mediawiki b/wiki/BioJava:Cookbook:Alphabets:CrossProduct.mediawiki
@@ -1,8 +1,8 @@
 == How do I make a CrossProductAlphabet such as a codon Alphabet ==
 
-CrossProductAlphabets result from the multiplication of other [http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Alphabet.html Alphabets]. CrossProductAlphabets are used to wrap up 2 or more [http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Symbol.html Symbols]into a single "cross product" [http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Symbol.html Symbol]. For example using a 3 way cross of the [[wp:DNA|DNA]] alphabet you could wrap a [[wp:codon|codon]] as a [http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Symbol.html Symbol]. You could then count those [[wp:codon|codon]] [http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Symbol.html Symbols] in a [http://www.biojava.org/docs/api14/org/biojava/bio/dist/Count.html Count] or you could used them in a [http://www.biojava.org/docs/api14/org/biojava/bio/dist/Distribution.html Distribution].
+CrossProductAlphabets result from the multiplication of other [http://www.biojava.org/docs/api1.8/org/biojava/bio/symbol/Alphabet.html Alphabets]. CrossProductAlphabets are used to wrap up 2 or more [http://www.biojava.org/docs/api1.8/org/biojava/bio/symbol/Symbol.html Symbols]into a single "cross product" [http://www.biojava.org/docs/api1.8/org/biojava/bio/symbol/Symbol.html Symbol]. For example using a 3 way cross of the [[wp:DNA|DNA]] alphabet you could wrap a [[wp:codon|codon]] as a [http://www.biojava.org/docs/api1.8/org/biojava/bio/symbol/Symbol.html Symbol]. You could then count those [[wp:codon|codon]] [http://www.biojava.org/docs/api1.8/org/biojava/bio/symbol/Symbol.html Symbols] in a [http://www.biojava.org/docs/api1.8/org/biojava/bio/dist/Count.html Count] or you could used them in a [http://www.biojava.org/docs/api1.8/org/biojava/bio/dist/Distribution.html Distribution].
 
-CrossProductAlphabets can be created by name (if the component [http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Alphabet.html Alphabets] are registered in the [http://www.biojava.org/docs/api14/org/biojava/bio/symbol/AlphabetManager.html AlphabetManager]) or by making a list of the desired [http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Alphabet.html Alphabets] and creating the [http://www.biojava.org/docs/api14/org/biojava/bio/symbol/Alphabet.html Alphabet] from the [http://java.sun.com/j2se/1.4.2/docs/api/java/util/List.html List]. Both approaches are shown in the example below.
+CrossProductAlphabets can be created by name (if the component [http://www.biojava.org/docs/api1.8/org/biojava/bio/symbol/Alphabet.html Alphabets] are registered in the [http://www.biojava.org/docs/api1.8/org/biojava/bio/symbol/AlphabetManager.html AlphabetManager]) or by making a list of the desired [http://www.biojava.org/docs/api1.8/org/biojava/bio/symbol/Alphabet.html Alphabets] and creating the [http://www.biojava.org/docs/api1.8/org/biojava/bio/symbol/Alphabet.html Alphabet] from the [http://java.sun.com/j2se/1.4.2/docs/api/java/util/List.html List]. Both approaches are shown in the example below.
 
 <java>
 package biojava_in_anger;
