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_wikis/BioJava:BioJavaInside.md

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- [Biosense](http://www.inforsense.com/biosense.html): A commercial
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informatics offering from [Inforsense](http://www.inforsense.com/)
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that uses BioJava under the hood.
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- [BioSense](http://www.idbs.com/InforSenseSuite/BioSense): A plugin
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for the InforSense Suite, an analytics software platform by
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[IDBS](http://www.idbs.com/) that unitizes BioJava.
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_wikis/BioJava:BioJavaInside.mediawiki

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* [http://www.derkholm.net/thomas/dazzle Dazzle]: A BioJava based DAS server.
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* [http://www.inforsense.com/biosense.html Biosense]: A commercial informatics offering from [http://www.inforsense.com/ Inforsense] that uses BioJava under the hood.
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* [http://www.idbs.com/InforSenseSuite/BioSense BioSense]: A plugin for the InforSense Suite, an analytics software platform by [http://www.idbs.com/ IDBS] that unitizes BioJava.
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* [http://www.bioclipse.net Bioclipse]: A free, open source, workbench for chemo- and bioinformatics with powerful editing and visualization capabilities for molecules, sequences, proteins, spectra etc.
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* [http://lajolla.sourceforge.net LaJolla] Structural alignment of RNA and proteins using an index structure for fast alignment of thousands of structures. Including an easy to use command line interface. Open source at Sourceforge.
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* [http://www.geneinfinity.org/genbeans/index.html GenBeans]: A rich client platform for bioinformatics primarily focused on molecular biology and sequence analysis.
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* [http://www.geneinfinity.org/genbeans/index.html GenBeans]: A rich client platform for bioinformatics primarily focused on molecular biology and sequence analysis.
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== Publications ==
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BioJava has been used in the following publications. If you know of other publications please add them.

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