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/* The problem is that thre is no flexible xml -> html generation in biojava... */
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_wikis/BioJava_talk:CookBook:Blast:XML.md

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@@ -23,7 +23,7 @@ The problem is that thre is no flexible xml -\> html generation in biojava...
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Hello! If someone is interested I could post how to make it using
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BioJava classes. The main problem is that the parser biojava uses is not
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made for html generation. There is a parser that one can use to parse a
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plain biojava result file and generate SAX event, so you can pass it to
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plain biojava result file and generate SAX events, so you can pass it to
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html generator. It works sloooow (IMHO) and not as flexible as to apply
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xsl. I'm looking for a way to do the same for FASTA format... any idea?
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Cheers,

_wikis/BioJava_talk:CookBook:Blast:XML.mediawiki

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@@ -13,7 +13,7 @@ Just my own .02 cents and I am open to discuss this ;-)
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Hello!
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If someone is interested I could post how to make it using BioJava classes.
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The main problem is that the parser biojava uses is not made for html generation.
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There is a parser that one can use to parse a plain biojava result file and generate SAX event, so
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There is a parser that one can use to parse a plain biojava result file and generate SAX events, so
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you can pass it to html generator. It works sloooow (IMHO) and not as flexible as to apply xsl.
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I'm looking for a way to do the same for FASTA format... any idea?
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Cheers,

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