Change to wiki page

kohchuanhock · andreasprlic · commit 1c3b690ca238 · 2016-04-09T10:59:31.000-07:00
diff --git a/_wikis/BioJava:CookBook:AAPROP:profeat.md b/_wikis/BioJava:CookBook:AAPROP:profeat.md
@@ -7,15 +7,16 @@ title: BioJava:CookBook:AAPROP:profeat
 BioJava provides a set of APIs to generate PROFEAT properties.  
  PROFEAT generate properties of a protein sequence based on its
 converted attributes.  
- \* The seven different attributes are
 
-`* Hydrophobicity (Polar, Neutral, Hydrophobicity)`  
-` * Normalized van der Waals volume (Range 0 - 2.78, 2.95 - 4.0, 4.03 - 8.08)`  
-` * Polarity (Value 4.9 - 6.2, 8.0 - 9.2, 10.4 - 13.0)`  
-` * Polarizability (Value 0 - 1.08, 0.128 - 0.186, 0.219 - 0.409)`  
-` * Charge (Positive, Neutral, Negative)`  
-` * Secondary structure (Helix, Strand, Coil)`  
-` * Solvent accessibility (Buried, Exposed, Intermediate)`  
+-   The seven different attributes are
+-   Hydrophobicity (Polar, Neutral, Hydrophobicity)
+-   Normalized van der Waals volume (Range 0 - 2.78, 2.95 - 4.0, 4.03 -
+    8.08)
+-   Polarity (Value 4.9 - 6.2, 8.0 - 9.2, 10.4 - 13.0)
+-   Polarizability (Value 0 - 1.08, 0.128 - 0.186, 0.219 - 0.409)
+-   Charge (Positive, Neutral, Negative)
+-   Secondary structure (Helix, Strand, Coil)
+-   Solvent accessibility (Buried, Exposed, Intermediate)
 
 Please see
 [PROFEAT](http://nar.oxfordjournals.org/content/34/suppl_2/W32.abstract)
@@ -60,10 +61,6 @@ a:attribute2Transition2Double.keySet()){
 
 } </java>
 
-(See also: [How to define the XML files to customize mass of Amino Acids
-in the computation of Molecular
-Weight?](BioJava:CookBook:AAPROP:xmlfiles "wikilink"))
-
 Short Example 3: Computing the position with respect to the sequence where the given distribution of the grouping can be found
 ------------------------------------------------------------------------------------------------------------------------------
 
diff --git a/_wikis/BioJava:CookBook:AAPROP:profeat.mediawiki b/_wikis/BioJava:CookBook:AAPROP:profeat.mediawiki
@@ -3,14 +3,16 @@
 BioJava provides a set of APIs to generate PROFEAT properties.<br>
 
 PROFEAT generate properties of a protein sequence based on its converted attributes.<br/>
- * The seven different attributes are<p/>
- * Hydrophobicity (Polar, Neutral, Hydrophobicity)<br/>
- * Normalized van der Waals volume (Range 0 - 2.78, 2.95 - 4.0, 4.03 - 8.08)<br/>
- * Polarity (Value 4.9 - 6.2, 8.0 - 9.2, 10.4 - 13.0)<br/>
- * Polarizability (Value 0 - 1.08, 0.128 - 0.186, 0.219 - 0.409)<br/>
- * Charge (Positive, Neutral, Negative)<br/>
- * Secondary structure (Helix, Strand, Coil)<br/>
- * Solvent accessibility (Buried, Exposed, Intermediate)<br/>
+<ul>
+ <li>The seven different attributes are</li>
+ <li>Hydrophobicity (Polar, Neutral, Hydrophobicity)</li>
+ <li>Normalized van der Waals volume (Range 0 - 2.78, 2.95 - 4.0, 4.03 - 8.08)</li>
+ <li>Polarity (Value 4.9 - 6.2, 8.0 - 9.2, 10.4 - 13.0)</li>
+ <li>Polarizability (Value 0 - 1.08, 0.128 - 0.186, 0.219 - 0.409)</li>
+ <li>Charge (Positive, Neutral, Negative)</li>
+ <li>Secondary structure (Helix, Strand, Coil)</li>
+ <li>Solvent accessibility (Buried, Exposed, Intermediate)</li>
+</ul>
 
 Please see [http://nar.oxfordjournals.org/content/34/suppl_2/W32.abstract PROFEAT] for more information about these properties.<br>
 
@@ -47,8 +49,6 @@ for(ATTRIBUTE a:attribute2Transition2Double.keySet()){
 }
 </java>
 
-(See also: [[BioJava:CookBook:AAPROP:xmlfiles|How to define the XML files to customize mass of Amino Acids in the computation of Molecular Weight?]])
-
 ==Short Example 3: Computing the position with respect to the sequence where the given distribution of the grouping can be found==
 
 <java>
