Skip to content

Commit 0c8ac17

Browse files
sblivenandreasprlic
authored andcommitted
Adding SCOP2
1 parent 273b254 commit 0c8ac17

File tree

2 files changed

+14
-10
lines changed

2 files changed

+14
-10
lines changed

_wikis/BioJava3_Feature_Requests.md

Lines changed: 8 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -7,11 +7,14 @@ The following features are missing from the current BioJava3.
77
If you are looking for a programming project and are interested in
88
contributing any of these please contact the biojava-dev mailing list.
99

10-
`- Genbank parser `
11-
`- Balibase`
12-
`- UniProt (XML/txt)`
13-
`- port the BioJava 1 Chromatogram parser to BioJava 3`
14-
`- Variation APIs that bring together Ensembl Variation, VCF file format, GFF3+GVF file format, samtools, Picard, GATK, etc.`
10+
- Genbank parser
11+
- Balibase
12+
- UniProt (XML/txt)
13+
- port the BioJava 1 Chromatogram parser to BioJava 3
14+
- Variation APIs that bring together Ensembl Variation, VCF file
15+
format, GFF3+GVF file format, samtools, Picard, GATK, etc.
16+
- SCOP2 parser (See [Github
17+
issue](https://github.com/biojava/biojava/issues/82))
1518

1619
There are also a number of algorithms where we would be interested in
1720
[Java ports](Algorithm_Java_port "wikilink").

_wikis/BioJava3_Feature_Requests.mediawiki

Lines changed: 6 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -2,11 +2,12 @@ The following features are missing from the current BioJava3.
22

33
If you are looking for a programming project and are interested in contributing any of these please contact the biojava-dev mailing list.
44

5-
- Genbank parser
6-
- Balibase
7-
- UniProt (XML/txt)
8-
- port the BioJava 1 Chromatogram parser to BioJava 3
9-
- Variation APIs that bring together Ensembl Variation, VCF file format, GFF3+GVF file format, samtools, Picard, GATK, etc.
5+
* Genbank parser
6+
* Balibase
7+
* UniProt (XML/txt)
8+
* port the BioJava 1 Chromatogram parser to BioJava 3
9+
* Variation APIs that bring together Ensembl Variation, VCF file format, GFF3+GVF file format, samtools, Picard, GATK, etc.
10+
* SCOP2 parser (See [https://github.com/biojava/biojava/issues/82 Github issue])
1011
1112
There are also a number of algorithms where we would be interested in [[Algorithm_Java_port|Java ports]].
1213

0 commit comments

Comments
 (0)