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<!DOCTYPE HTML>

<head>

<title>Source code</title>

</head>

<pre>001/*

002 * BioJava development code

003 *

004 * This code may be freely distributed and modified under the

005 * terms of the GNU Lesser General Public Licence. This should

006 * be distributed with the code. If you do not have a copy,

007 * see:

008 *

009 * http://www.gnu.org/copyleft/lesser.html

010 *

011 * Copyright for this code is held jointly by the individual

012 * authors. These should be listed in @author doc comments.

013 *

014 * For more information on the BioJava project and its aims,

015 * or to join the biojava-l mailing list, visit the home page

016 * at:

017 *

018 * http://www.biojava.org/

019 *

020 */

021package demo;

022

023

024import org.biojava.nbio.structure.Structure;

025import org.biojava.nbio.structure.align.util.AtomCache;

026import org.biojava.nbio.structure.cath.CathDatabase;

027import org.biojava.nbio.structure.cath.CathDomain;

028import org.biojava.nbio.structure.cath.CathInstallation;

029

030/** An example for how to access CATH data.

031 *

032 * run with -Xmx512M

033 *

034 * @author Andreas Prlic

035 *

036 */

037public class DemoCATH {

038 public static void main(String[] args){

039

040 AtomCache cache = new AtomCache();

041

042 CathDatabase database = new CathInstallation(cache.getPath());

043

044 String domainID = "1cdgA01";

045

046 CathDomain cathDomain = database.getDescriptionByCathId(domainID);

047

048 System.out.println(cathDomain);

049

050

051 Structure cathDomainStructure;

052 try {

053 cathDomainStructure = cache.getStructure(domainID);

054 System.out.println(cathDomainStructure);

055 } catch (Exception e) {

056 // TODO Auto-generated catch block

057 e.printStackTrace();

058 }

059

060

061

062

063 }

064}

</pre>

</div>

</main>

</body>

</html>

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