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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (1.8.0_261) on Mon Nov 09 18:21:01 CST 2020 -->
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<title>DocRef (biojava-legacy 1.9.4 API)</title>
<meta name="date" content="2020-11-09">
<link rel="stylesheet" type="text/css" href="../../stylesheet.css" title="Style">
<script type="text/javascript" src="../../script.js"></script>
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<script type="text/javascript"><!--
try {
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//-->
var methods = {"i0":6,"i1":6,"i2":6,"i3":6,"i4":6,"i5":6,"i6":6,"i7":6,"i8":6};
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<li><a href="../../overview-summary.html">Overview</a></li>
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<li class="navBarCell1Rev">Class</li>
<li><a href="class-use/DocRef.html">Use</a></li>
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<li><a href="../../org/biojavax/CrossReferenceResolver.html" title="interface in org.biojavax"><span class="typeNameLink">Prev Class</span></a></li>
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<ul class="subNavList">
<li>Summary: </li>
<li>Nested | </li>
<li><a href="#field.summary">Field</a> | </li>
<li>Constr | </li>
<li><a href="#method.summary">Method</a></li>
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<li><a href="#field.detail">Field</a> | </li>
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<div class="subTitle">org.biojavax</div>
<h2 title="Interface DocRef" class="title">Interface DocRef</h2>
</div>
<div class="contentContainer">
<div class="description">
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<dl>
<dt>All Superinterfaces:</dt>
<dd><a href="../../org/biojava/utils/Changeable.html" title="interface in org.biojava.utils">Changeable</a>, <a href="https://docs.oracle.com/javase/8/docs/api/java/lang/Comparable.html?is-external=true" title="class or interface in java.lang">Comparable</a></dd>
</dl>
<dl>
<dt>All Known Implementing Classes:</dt>
<dd><a href="../../org/biojavax/SimpleDocRef.html" title="class in org.biojavax">SimpleDocRef</a></dd>
</dl>
<hr>
<br>
<pre>public interface <a href="../../src-html/org/biojavax/DocRef.html#line.37">DocRef</a>
extends <a href="https://docs.oracle.com/javase/8/docs/api/java/lang/Comparable.html?is-external=true" title="class or interface in java.lang">Comparable</a>, <a href="../../org/biojava/utils/Changeable.html" title="interface in org.biojava.utils">Changeable</a></pre>
<div class="block">Represents a documentary reference. Relates to the reference table
in BioSQL.</div>
<dl>
<dt><span class="simpleTagLabel">Since:</span></dt>
<dd>1.5</dd>
<dt><span class="simpleTagLabel">Author:</span></dt>
<dd>Mark Schreiber, Richard Holland</dd>
<dt><span class="seeLabel">See Also:</span></dt>
<dd><a href="../../org/biojavax/RankedDocRef.html" title="interface in org.biojavax"><code>RankedDocRef</code></a></dd>
</dl>
</li>
</ul>
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<!-- =========== FIELD SUMMARY =========== -->
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<h3>Field Summary</h3>
<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Field Summary table, listing fields, and an explanation">
<caption><span>Fields</span><span class="tabEnd"> </span></caption>
<tr>
<th class="colFirst" scope="col">Modifier and Type</th>
<th class="colLast" scope="col">Field and Description</th>
</tr>
<tr class="altColor">
<td class="colFirst"><code>static <a href="../../org/biojava/utils/ChangeType.html" title="class in org.biojava.utils">ChangeType</a></code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../../org/biojavax/DocRef.html#CROSSREF">CROSSREF</a></span></code> </td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>static <a href="../../org/biojava/utils/ChangeType.html" title="class in org.biojava.utils">ChangeType</a></code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../../org/biojavax/DocRef.html#REMARK">REMARK</a></span></code> </td>
</tr>
</table>
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<!-- ========== METHOD SUMMARY =========== -->
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<h3>Method Summary</h3>
<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t3" class="tableTab"><span><a href="javascript:show(4);">Abstract Methods</a></span><span class="tabEnd"> </span></span></caption>
<tr>
<th class="colFirst" scope="col">Modifier and Type</th>
<th class="colLast" scope="col">Method and Description</th>
</tr>
<tr id="i0" class="altColor">
<td class="colFirst"><code><a href="https://docs.oracle.com/javase/8/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</a><<a href="../../org/biojavax/DocRefAuthor.html" title="interface in org.biojavax">DocRefAuthor</a>></code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../../org/biojavax/DocRef.html#getAuthorList--">getAuthorList</a></span>()</code>
<div class="block">Returns the authors of the document reference as a set of DocRefAuthor
implementation instances.</div>
</td>
</tr>
<tr id="i1" class="rowColor">
<td class="colFirst"><code><a href="https://docs.oracle.com/javase/8/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a></code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../../org/biojavax/DocRef.html#getAuthors--">getAuthors</a></span>()</code>
<div class="block">Returns the authors of the document reference.</div>
</td>
</tr>
<tr id="i2" class="altColor">
<td class="colFirst"><code><a href="https://docs.oracle.com/javase/8/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a></code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../../org/biojavax/DocRef.html#getCRC--">getCRC</a></span>()</code>
<div class="block">Returns a CRC64 checksum of this document reference, allowing for easy
comparisons with other document references.</div>
</td>
</tr>
<tr id="i3" class="rowColor">
<td class="colFirst"><code><a href="../../org/biojavax/CrossRef.html" title="interface in org.biojavax">CrossRef</a></code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../../org/biojavax/DocRef.html#getCrossref--">getCrossref</a></span>()</code>
<div class="block">The document reference may refer to an object in another database.</div>
</td>
</tr>
<tr id="i4" class="altColor">
<td class="colFirst"><code><a href="https://docs.oracle.com/javase/8/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a></code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../../org/biojavax/DocRef.html#getLocation--">getLocation</a></span>()</code>
<div class="block">Returns a textual description of the document reference.</div>
</td>
</tr>
<tr id="i5" class="rowColor">
<td class="colFirst"><code><a href="https://docs.oracle.com/javase/8/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a></code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../../org/biojavax/DocRef.html#getRemark--">getRemark</a></span>()</code>
<div class="block">If remarks have been made about this document reference, this method
will return them.</div>
</td>
</tr>
<tr id="i6" class="altColor">
<td class="colFirst"><code><a href="https://docs.oracle.com/javase/8/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a></code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../../org/biojavax/DocRef.html#getTitle--">getTitle</a></span>()</code>
<div class="block">Returns the title of the document reference.</div>
</td>
</tr>
<tr id="i7" class="rowColor">
<td class="colFirst"><code>void</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../../org/biojavax/DocRef.html#setCrossref-org.biojavax.CrossRef-">setCrossref</a></span>(<a href="../../org/biojavax/CrossRef.html" title="interface in org.biojavax">CrossRef</a> crossref)</code>
<div class="block">The document reference may refer to an object in another database.</div>
</td>
</tr>
<tr id="i8" class="altColor">
<td class="colFirst"><code>void</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../../org/biojavax/DocRef.html#setRemark-java.lang.String-">setRemark</a></span>(<a href="https://docs.oracle.com/javase/8/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a> Remark)</code>
<div class="block">Set the remarks for this document reference using this method.</div>
</td>
</tr>
</table>
<ul class="blockList">
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<h3>Methods inherited from interface java.lang.<a href="https://docs.oracle.com/javase/8/docs/api/java/lang/Comparable.html?is-external=true" title="class or interface in java.lang">Comparable</a></h3>
<code><a href="https://docs.oracle.com/javase/8/docs/api/java/lang/Comparable.html?is-external=true#compareTo-T-" title="class or interface in java.lang">compareTo</a></code></li>
</ul>
<ul class="blockList">
<li class="blockList"><a name="methods.inherited.from.class.org.biojava.utils.Changeable">
<!-- -->
</a>
<h3>Methods inherited from interface org.biojava.utils.<a href="../../org/biojava/utils/Changeable.html" title="interface in org.biojava.utils">Changeable</a></h3>
<code><a href="../../org/biojava/utils/Changeable.html#addChangeListener-org.biojava.utils.ChangeListener-">addChangeListener</a>, <a href="../../org/biojava/utils/Changeable.html#addChangeListener-org.biojava.utils.ChangeListener-org.biojava.utils.ChangeType-">addChangeListener</a>, <a href="../../org/biojava/utils/Changeable.html#isUnchanging-org.biojava.utils.ChangeType-">isUnchanging</a>, <a href="../../org/biojava/utils/Changeable.html#removeChangeListener-org.biojava.utils.ChangeListener-">removeChangeListener</a>, <a href="../../org/biojava/utils/Changeable.html#removeChangeListener-org.biojava.utils.ChangeListener-org.biojava.utils.ChangeType-">removeChangeListener</a></code></li>
</ul>
</li>
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</div>
<div class="details">
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<!-- ============ FIELD DETAIL =========== -->
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<h3>Field Detail</h3>
<a name="CROSSREF">
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<h4>CROSSREF</h4>
<pre>static final <a href="../../org/biojava/utils/ChangeType.html" title="class in org.biojava.utils">ChangeType</a> <a href="../../src-html/org/biojavax/DocRef.html#line.39">CROSSREF</a></pre>
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<a name="REMARK">
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<h4>REMARK</h4>
<pre>static final <a href="../../org/biojava/utils/ChangeType.html" title="class in org.biojava.utils">ChangeType</a> <a href="../../src-html/org/biojavax/DocRef.html#line.44">REMARK</a></pre>
</li>
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<h3>Method Detail</h3>
<a name="getCrossref--">
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<ul class="blockList">
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<h4>getCrossref</h4>
<pre><a href="../../org/biojavax/CrossRef.html" title="interface in org.biojavax">CrossRef</a> <a href="../../src-html/org/biojavax/DocRef.html#line.55">getCrossref</a>()</pre>
<div class="block">The document reference may refer to an object in another database. If so,
this method will return that reference.</div>
<dl>
<dt><span class="returnLabel">Returns:</span></dt>
<dd>Value of property crossref.</dd>
</dl>
</li>
</ul>
<a name="setCrossref-org.biojavax.CrossRef-">
<!-- -->
</a>
<ul class="blockList">
<li class="blockList">
<h4>setCrossref</h4>
<pre>void <a href="../../src-html/org/biojavax/DocRef.html#line.63">setCrossref</a>(<a href="../../org/biojavax/CrossRef.html" title="interface in org.biojavax">CrossRef</a> crossref)
throws <a href="../../org/biojava/utils/ChangeVetoException.html" title="class in org.biojava.utils">ChangeVetoException</a></pre>
<div class="block">The document reference may refer to an object in another database. Use this
method to set that reference. Null will unset it.</div>
<dl>
<dt><span class="paramLabel">Parameters:</span></dt>
<dd><code>crossref</code> - New value of property crossref.</dd>
<dt><span class="throwsLabel">Throws:</span></dt>
<dd><code><a href="../../org/biojava/utils/ChangeVetoException.html" title="class in org.biojava.utils">ChangeVetoException</a></code> - in case of objections.</dd>
</dl>
</li>
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<a name="getLocation--">
<!-- -->
</a>
<ul class="blockList">
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<h4>getLocation</h4>
<pre><a href="https://docs.oracle.com/javase/8/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a> <a href="../../src-html/org/biojavax/DocRef.html#line.70">getLocation</a>()</pre>
<div class="block">Returns a textual description of the document reference. This field is
immutable so should be set using the constructor of the implementing class.</div>
<dl>
<dt><span class="returnLabel">Returns:</span></dt>
<dd>Value of property location.</dd>
</dl>
</li>
</ul>
<a name="getTitle--">
<!-- -->
</a>
<ul class="blockList">
<li class="blockList">
<h4>getTitle</h4>
<pre><a href="https://docs.oracle.com/javase/8/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a> <a href="../../src-html/org/biojavax/DocRef.html#line.76">getTitle</a>()</pre>
<div class="block">Returns the title of the document reference.</div>
<dl>
<dt><span class="returnLabel">Returns:</span></dt>
<dd>Value of property title.</dd>
</dl>
</li>
</ul>
<a name="getAuthors--">
<!-- -->
</a>
<ul class="blockList">
<li class="blockList">
<h4>getAuthors</h4>
<pre><a href="https://docs.oracle.com/javase/8/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a> <a href="../../src-html/org/biojavax/DocRef.html#line.85">getAuthors</a>()</pre>
<div class="block">Returns the authors of the document reference.
It will usually be in the form "Jones H., Bloggs J et al" or similar -
a human-readable text value. Editors will have (ed.) appended,
consortiums will have (consortium) appended.</div>
<dl>
<dt><span class="returnLabel">Returns:</span></dt>
<dd>Value of property authors.</dd>
</dl>
</li>
</ul>
<a name="getAuthorList--">
<!-- -->
</a>
<ul class="blockList">
<li class="blockList">
<h4>getAuthorList</h4>
<pre><a href="https://docs.oracle.com/javase/8/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</a><<a href="../../org/biojavax/DocRefAuthor.html" title="interface in org.biojavax">DocRefAuthor</a>> <a href="../../src-html/org/biojavax/DocRef.html#line.93">getAuthorList</a>()</pre>
<div class="block">Returns the authors of the document reference as a set of DocRefAuthor
implementation instances. This field is immutable so should be set using
the constructor of the implementing class.</div>
<dl>
<dt><span class="returnLabel">Returns:</span></dt>
<dd>The set of authors.</dd>
</dl>
</li>
</ul>
<a name="getCRC--">
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<h4>getCRC</h4>
<pre><a href="https://docs.oracle.com/javase/8/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a> <a href="../../src-html/org/biojavax/DocRef.html#line.100">getCRC</a>()</pre>
<div class="block">Returns a CRC64 checksum of this document reference, allowing for easy
comparisons with other document references.</div>
<dl>
<dt><span class="returnLabel">Returns:</span></dt>
<dd>Value of property CRC.</dd>
</dl>
</li>
</ul>
<a name="getRemark--">
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<h4>getRemark</h4>
<pre><a href="https://docs.oracle.com/javase/8/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a> <a href="../../src-html/org/biojavax/DocRef.html#line.107">getRemark</a>()</pre>
<div class="block">If remarks have been made about this document reference, this method
will return them.</div>
<dl>
<dt><span class="returnLabel">Returns:</span></dt>
<dd>Value of property Remark.</dd>
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<h4>setRemark</h4>
<pre>void <a href="../../src-html/org/biojavax/DocRef.html#line.116">setRemark</a>(<a href="https://docs.oracle.com/javase/8/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a> Remark)
throws <a href="../../org/biojava/utils/ChangeVetoException.html" title="class in org.biojava.utils">ChangeVetoException</a></pre>
<div class="block">Set the remarks for this document reference using this method. Remarks
can be anything, it is derived from the equivalent field in the GenBank
format.</div>
<dl>
<dt><span class="paramLabel">Parameters:</span></dt>
<dd><code>Remark</code> - New value of property Remark.</dd>
<dt><span class="throwsLabel">Throws:</span></dt>
<dd><code><a href="../../org/biojava/utils/ChangeVetoException.html" title="class in org.biojava.utils">ChangeVetoException</a></code> - in case of objections.</dd>
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