Skip to content

Commit fc70659

Browse files
sblivensbliven
committed
Executing bin/update_index.py for the first time.
This adds footers to every page. No text changes.
1 parent d83f318 commit fc70659

26 files changed

+303
-5
lines changed

‎README.md‎

Lines changed: 2 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -27,3 +27,5 @@ Book 4: [The Genomics Module](genomics/README.md), working with genomic data
2727
The content of this tutorial is available under the [CC-BY](http://creativecommons.org/licenses/by/3.0/) license.
2828

2929
[view license](license.md)
30+
31+
<!--automatically generated footer-->

‎alignment/README.md‎

Lines changed: 12 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -51,3 +51,15 @@ The content of this tutorial is available under the [CC-BY](http://creativecommo
5151
[view license](../license.md)
5252

5353

54+
55+
<!--automatically generated footer-->
56+
57+
---
58+
59+
Navigation:
60+
[Home](../README.md)
61+
| Book 2: The Alignment module
62+
63+
Prev: [Book 1: The Core module](../core/README.md)
64+
65+
Next: [Book 3: The Protein Structure modules](../structure/README.md)

‎alignment/installation.md‎

Lines changed: 9 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -49,3 +49,12 @@ If you run
4949

5050
on your project, the BioJava dependencies will be automatically downloaded and installed for you.
5151

52+
53+
<!--automatically generated footer-->
54+
55+
---
56+
57+
Navigation:
58+
[Home](../README.md)
59+
| [Book 2: The Alignment module](README.md)
60+
| Chapter 1 : Installation

‎core/README.md‎

Lines changed: 10 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -45,3 +45,13 @@ The content of this tutorial is available under the [CC-BY](http://creativecommo
4545
[view license](../license.md)
4646

4747

48+
49+
<!--automatically generated footer-->
50+
51+
---
52+
53+
Navigation:
54+
[Home](../README.md)
55+
| Book 1: The Core module
56+
57+
Next: [Book 2: The Alignment module](../alignment/README.md)

‎core/installation.md‎

Lines changed: 9 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -49,3 +49,12 @@ If you run
4949

5050
on your project, the BioJava dependencies will be automatically downloaded and installed for you.
5151

52+
53+
<!--automatically generated footer-->
54+
55+
---
56+
57+
Navigation:
58+
[Home](../README.md)
59+
| [Book 1: The Core module](README.md)
60+
| Chapter 1 : Installation

‎genomics/README.md‎

Lines changed: 10 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -54,3 +54,13 @@ The content of this tutorial is available under the [CC-BY](http://creativecommo
5454
[view license](../license.md)
5555

5656

57+
58+
<!--automatically generated footer-->
59+
60+
---
61+
62+
Navigation:
63+
[Home](../README.md)
64+
| Book 4: The Genomics Module
65+
66+
Prev: [Book 3: The Protein Structure modules](../structure/README.md)

‎genomics/chromosomeposition.md‎

Lines changed: 13 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -38,4 +38,16 @@ If a local copy of the file is available, it can be provide via this:
3838

3939

4040

41-
```
41+
```
42+
<!--automatically generated footer-->
43+
44+
---
45+
46+
Navigation:
47+
[Home](../README.md)
48+
| [Book 4: The Genomics Module](README.md)
49+
| Chapter 3 : chromosomal positions
50+
51+
Prev: [Chapter 2 : gene names information](genenames.md)
52+
53+
Next: [Chapter 4 : GTF and GFF files](gff.md)

‎genomics/genebank.md‎

Lines changed: 13 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -96,4 +96,16 @@ Use the GenbankWriterHelper to write DNA sequences into a Genbank file.
9696
// or print it out on the console
9797
System.out.println(fragwriter.toString());
9898

99-
```
99+
```
100+
<!--automatically generated footer-->
101+
102+
---
103+
104+
Navigation:
105+
[Home](../README.md)
106+
| [Book 4: The Genomics Module](README.md)
107+
| Chapter 5 : Genebank
108+
109+
Prev: [Chapter 4 : GTF and GFF files](gff.md)
110+
111+
Next: [Chapter 5 : karyotype (cytoband)](karyotype.md)

‎genomics/genenames.md‎

Lines changed: 13 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -46,4 +46,16 @@ If you have a local copy of this file, then you can just provide an input stream
4646
GeneNamesParser.getGeneNames(inStream);
4747

4848

49-
```
49+
```
50+
<!--automatically generated footer-->
51+
52+
---
53+
54+
Navigation:
55+
[Home](../README.md)
56+
| [Book 4: The Genomics Module](README.md)
57+
| Chapter 2 : gene names information
58+
59+
Prev: [Chapter 1 : Installation](installation.md)
60+
61+
Next: [Chapter 3 : chromosomal positions](chromosomeposition.md)

‎genomics/gff.md‎

Lines changed: 13 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -50,3 +50,16 @@ specific gene prediction program or features supported by your favorite genome b
5050
complete set of java classes to do these conversions where the list of supported gene prediction applications and
5151
genome browsers will get longer based on end user requests.
5252

53+
54+
<!--automatically generated footer-->
55+
56+
---
57+
58+
Navigation:
59+
[Home](../README.md)
60+
| [Book 4: The Genomics Module](README.md)
61+
| Chapter 4 : GTF and GFF files
62+
63+
Prev: [Chapter 3 : chromosomal positions](chromosomeposition.md)
64+
65+
Next: [Chapter 5 : Genebank](genebank.md)

0 commit comments

Comments
 (0)