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improving documentation according to biojava/biojava#191 
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‎core/README.md‎

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Chapter 1 - Quick [Installation](installation.md)
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Chapter 2 - Reading and Writing of FASTA sequences
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Chapter 2 - [Basic Sequence types](sequences.md)
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Chapter 3 - Translating DNA and protein sequences.
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Chapter 3 - Reading and Writing sequences
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Chapter 4 - [Translating](translating.md) DNA and protein sequences.
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## Please cite
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‎core/sequences.md‎

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Sequences in BioJava
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=====================
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BioJava supports a number of basic biological sequence types: DNA, RNA, and protein sequences.
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## Create a basic sequence object
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Create a DNA sequence
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```java
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DNASequence seq = new DNASequence("GTAC");
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```
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In addition to the basic DNA sequence class there are specialized classes that extend DNASequence:
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ChromosomeSequence, GeneSequence, IntronSequence, ExonSequence, TranscriptSequence
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Create a RNA sequence
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```java
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RNASequence seq = new RNASequence("GUAC");
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```
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Create a protein sequence
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```java
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ProteinSequence seq = new ProteinSequence("MSTNPKPQRKTKRNTNRRPQDVKFPGG");
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```
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## Ambiguity codes
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In particular when dealing with nucleotide sequences, sometimes the exact nucleotides are not known.
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BioJava supports standard conventions for dealing with such ambiguity.
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For example to represent the nucleotides "A or T" often "W" is getting used.
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The expected set of compounds in a sequence by default is strict, however it takes only one line of code to switch to supporting
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ambiguity codes.
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```java
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// this throws an error
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DNASequence dna2 = new DNASequence("WWW");
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// however this works:
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AmbiguityDNACompoundSet ambiguityDNACompoundSet = AmbiguityDNACompoundSet.getDNACompoundSet();
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DNASequence dna2 = new DNASequence("WWW",ambiguityDNACompoundSet);
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```
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## Protein sequences and ambiguity
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The default AminoAcidCompoundSet already supports "Asparagine or Aspartic acid" and related ambiguities.
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It also contains support for Selenocysteine and Pyrrolysine
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## More details
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See the Cookbook for more details on dealing with sequences: [http://biojava.org/wiki/BioJava:CookBook:Core:Overview](http://biojava.org/wiki/BioJava:CookBook:Core:Overview}

‎core/translating.md‎

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Translating RNA and protein sequences
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=====================================
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An example for how to parse a sequence from a String and using the Translation engine to convert into amino acid sequence.
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```java
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String dnaFastaS = ">gb:GQ903697|Organism:Arenavirus H0030026 H0030026|Segment:S|Host:Rat\n" +
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"CGCACAGAGGATCCTAGGCGTTACTGACTTGCGCTAATAACAGATACTGTTTCATATTTAGATAAAGACC\n" +
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"CAGCCAACTGATTGGTCAGCATGGGACAACTTGTGTCCCTCTTCAGTGAAATTCCATCAATCATACACGA\n" +
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"AGCTCTCAATGTTGCTCTCGTAGCTGTTAGCATCATTGCAATATTGAAAGGGGTTGTGAATGTTTGGAAG\n" +
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"AGTGGAGTTTTGCAGCTTTTGGCCTTCTTGCTCCTGGCGGGAAGATCCTGCTCAGTCATAATTGGTCATC\n" +
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"ATCTCGAACTGCAGCATGTGATCTTCAATGGGTCATCAATCACACCCTTTTTACCAGTTACATGTAAGAT\n" +
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"CAATGATACCTACTTCCTACTAAGAGGCCCCTATGAAGCTGATTGGGCAGTTGAATTGAGTGTAACTGAA\n" +
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"ACCACAGTCTTGGTTGATCTTGAAGGTGGCAGCTCAATGAAGCTGAAAGCCGGAAACATCTCAGGTTGTC\n" +
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"TTGGAGACAACCCCCATCTGAGATCAGTGGTCTTCACATTGAATTGGTTGCTAACAGGATTAGATCATGT\n" +
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"TATTGATTCTGACCCGAAAATTCTCTGTGATCTTAAAGACAGTGGGCACTTTCGTCTCCAGATGAACTTA\n" +
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"ACAGAAAAGCACTATTGTGACAAGTTTCACATCAAAATGGGCAAGGTCTTTGGCGTATTCAAAGATCCGT\n" +
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"GCATGGCTGGTGGTAAAATGTTTGCCATACTAAAAAATACCTCTTGGTCGAACCAGTGCCAAGGAAACCA\n" +
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"TGTCAGCACCATTCATCTTGTCCTTCAGAGTAATTTCAAACAGGTCCTCAGTAGCAGGAAACTGTTGAAC\n" +
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"TTTTTCAGCTGGTCATTGTCTGATGCCACAGGGGCTGATATGCCTGGTGGTTTTTGTCTGGAAAAATGGA\n" +
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"TGTTGATTTCAAGTGAACTGAAATGCTTTGGAAACACAGCTGTGGCAAAGTGCAACTTAAATCATGACTC\n" +
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"AGAGTTCTGTGACATGCTTAGGCTTTTTGATTTCAACAAAAAGGCAATAGTCACTCTTCAGAACAAAACA\n" +
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"AAGCATCGGCTGGACACAGTAATTACTGCTATCAATTCATTGATCTCTGATAATATTCTTATGAAGAACA\n" +
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"GGATTAAAGAATTGATAGATGTTCCTTACTGTAATTACACCAAATTTTGGTATGTCAATCACACAGGTCT\n" +
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"AAATCTGCACACCCTTCCAAGATGTTGGCTTGTTAAAAATGGTAGCTACTTGAATGTGTCTGACTTCAGG\n" +
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"AATGAGTGGATATTGGAGAGTGATCATCTTGTTTCGGAGATCCTTTCAAAGGAGTATGAGGAAAGGCAAA\n" +
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"ATCGTACACCACTCTCACTGGTTGACATCTGTTTCTGGAGTACATTGTTTTACACAGCATCAATTTTCCT\n" +
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"ACACCTCTTGAGAATTCCAACCCACAGACACATTGTTGGTGAGGGCTGCCCGAAGCCTCATAGGCTAAAC\n" +
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"AGGCACTCAATATGTGCTTGTGGCCTTTTCAAACAAGAAGGCAGACCCTTGAGATGGGTAAGAAAGGTGT\n" +
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"GAACAATGGTTGCTTGGTGGCCTCCATTGCTGCACCCCCCTAGGGGGGTGCAGCAATGGAGGTTCTCGYT\n" +
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"GAGCCTAGAGAACAACTGTTGAATCGGGTTCTCTAAAGAGAACATCGATTGGTAGTACCCTTTTTGGTTT\n" +
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"TTCATTGGTCACTGACCCTGAAAGCACAGCACTGAACATCAAACAGTCCAAAAGTGCACAGTGTGCATTT\n" +
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"GTTGTGGCTGGTGCTGATCCTTTCTTCTTACTTTTAATGACTATTCCCTTATGTCTGTCACACAGATGTT\n" +
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"CAAATCTCTTCCAAACAAGATCTTCAAAGAGCCGTGACTGTTCTGCGGTCAGTTTGACATCAACAATCTT\n" +
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"CAAATCCTGTCTTCCATGCATATCAAAGAGCCTCCTAATATCATCAGCACCTTGCGCAGTGAAAACCATG\n" +
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"GATTTAGGCAGACTCCTTATTATGCTTGTGATGAGGCCAGGTCGTGCATGTTCAACATCCTTCAGCAATA\n" +
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"TCCCATGACAATATTTACTTTGGTCCTTAAAAGATTTTATGTCATTGGGTTTTCTGTAGCAGTGGATGAA\n" +
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"TTTTTGTGATTCAGGCTGGTAAATTGCAAACTCAACAGGGTCATGTGGCGGGCCTTCAATGTCAATCCAT\n" +
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"GTTGTGTCACTGACCATCAACGACTCTACACTTCTCTTCACCTGAGCCTCCACCTCAGGCTTGAGCGTGG\n" +
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"ACAAGAGTGGGGCACCACCGTTCCGGATGGGGACTGGTGTTTTGCTTGGTAAACTCTCAAATTCCACAAC\n" +
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"TGTATTGTCCCATGCTCTCCCTTTGATCTGTGATCTTGATGAAATGTAAGGCCAGCCCTCACCAGAGAGA\n" +
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"CACACCTTATAAAGTATGTTTTCATAAGGATTCCTCTGTCCTGGTATGGCACTGATGAACATGTTTTCCC\n" +
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"TCTTTTTGATCTCCAAGAGGGTTTTTATAATGGTTGTGAATGTGGACTCCTCAATCTTTATTGTTTCCAG\n" +
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"CATGTTGCCACCATCAATCAGGCAAGCACCGGCTTTCACAGCAGCTGATAAACTAAGGTTGTAGCCTGAT\n" +
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"ATGTTAATTTGAGAATCCTCCTGAGTGATTACCTTTAGAGAAGGATGCTTCTCCATCAAAGCATCTAAGT\n" +
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"CACTTAAATTAGGGTATTTTGCTGTGTATAGCAACCCCAGATCTGTGAGGGCCTGAACCACATCATTTAG\n" +
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"AGTTTCCCCTCCCTGTTCAGTCATACAGGAAATTGTGAGTGCTGGCATCGATCCAAATTGGTTGATCATA\n" +
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"AGTGATGAGTCTTTAACGTCCCAGACTTTGACCACCCCTCCAGTTCTAGCCAACCCAGGTCTCTGAATAC\n" +
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"CAACAAGTTGCAGAATTTCGGACCTCCTGGTGAGCTGTGTTGTAGAGAGGTTCCCTAGATACTGGCCACC\n" +
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"TGTGGCTGTCAACCTCTCTGTTCTTTGAACTTTTTGCCTTAATTTGTCCAAGTCACTGGAGAGTTCCATT\n" +
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"AGCTCTTCCTTTGACAATGATCCTATCTTAAGGAACATGTTCTTTTGGGTTGACTTCATGACCATCAATG\n" +
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"AGTCAACTTCCTTATTCAAGTCCCTCAAACTAACAAGATCACTGTCATCTCTTTTAGACCTCCTCATCAT\n" +
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"GCGTTGCACACTTGCAACCTTTGAAAAATCTAAGCCGGACAGAAGAGCCCTCGCGTCAGTTAGGACATCT\n" +
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"GCCTTAACAGCAGTTGTCCAGTTCGAGAGTCCTCTCCTGAGAGACTGTGTCCATCTGAATGATGGGATTG\n" +
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"GTTGTTCGCTCATAGTGATGAAATTGCGCAGAGTTATCCAAAAGCCTAGGATCCTCTGTGCG";
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try {
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// parse the raw sequence from the string
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InputStream stream = new ByteArrayInputStream(dnaFastaS.getBytes());
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// define the Ambiguity Compound Sets
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AmbiguityDNACompoundSet ambiguityDNACompoundSet = AmbiguityDNACompoundSet.getDNACompoundSet();
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CompoundSet<NucleotideCompound> nucleotideCompoundSet = AmbiguityRNACompoundSet.getDNACompoundSet();
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FastaReader<DNASequence, NucleotideCompound> proxy =
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new FastaReader<DNASequence, NucleotideCompound>(
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stream,
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new GenericFastaHeaderParser<DNASequence, NucleotideCompound>(),
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new DNASequenceCreator(ambiguityDNACompoundSet));
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// has only one entry in this example, but could be easily extended to parse a FASTA file with multiple sequences
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LinkedHashMap<String, DNASequence> dnaSequences = proxy.process();
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// Initialize the Transcription Engine
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TranscriptionEngine engine = new
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TranscriptionEngine.Builder().dnaCompounds(ambiguityDNACompoundSet).rnaCompounds(nucleotideCompoundSet).build();
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Frame[] sixFrames = Frame.getAllFrames();
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for (DNASequence dna : dnaSequences.values()) {
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Map<Frame, Sequence<AminoAcidCompound>> results = engine.multipleFrameTranslation(dna, sixFrames);
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for (Frame frame : sixFrames){
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System.out.println("Translated Frame:" + frame +" : " + results.get(frame));
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}
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}
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} catch (Exception e){
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e.printStackTrace();
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}
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```
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This code will print out:
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```
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Translated Frame:ONE : RTEDPRRY*LALITDTVSYLDKDPAN*LVSMGQLVSLFSEIPSIIHEALNVALVAVSIIAILKGVVNVWKSGVLQLLAFLLLAGRSCSVIIGHHLELQHVIFNGSSITPFLPVTCKINDTYFLLRGPYEADWAVELSVTETTVLVDLEGGSSMKLKAGNISGCLGDNPHLRSVVFTLNWLLTGLDHVIDSDPKILCDLKDSGHFRLQMNLTEKHYCDKFHIKMGKVFGVFKDPCMAGGKMFAILKNTSWSNQCQGNHVSTIHLVLQSNFKQVLSSRKLLNFFSWSLSDATGADMPGGFCLEKWMLISSELKCFGNTAVAKCNLNHDSEFCDMLRLFDFNKKAIVTLQNKTKHRLDTVITAINSLISDNILMKNRIKELIDVPYCNYTKFWYVNHTGLNLHTLPRCWLVKNGSYLNVSDFRNEWILESDHLVSEILSKEYEERQNRTPLSLVDICFWSTLFYTASIFLHLLRIPTHRHIVGEGCPKPHRLNRHSICACGLFKQEGRPLRWVRKV*TMVAWWPPLLHPPRGVQQWRFSXSLENNC*IGFSKENIDW*YPFWFFIGH*P*KHSTEHQTVQKCTVCICCGWC*SFLLTFNDYSLMSVTQMFKSLPNKIFKEP*LFCGQFDINNLQILSSMHIKEPPNIISTLRSENHGFRQTPYYACDEARSCMFNILQQYPMTIFTLVLKRFYVIGFSVAVDEFL*FRLVNCKLNRVMWRAFNVNPCCVTDHQRLYTSLHLSLHLRLERGQEWGTTVPDGDWCFAW*TLKFHNCIVPCSPFDL*S**NVRPALTRETHLIKYVFIRIPLSWYGTDEHVFPLFDLQEGFYNGCECGLLNLYCFQHVATINQASTGFHSS**TKVVA*YVNLRILLSDYL*RRMLLHQSI*VT*IRVFCCV*QPQICEGLNHII*SFPSLFSHTGNCECWHRSKLVDHK**VFNVPDFDHPSSSSQPRSLNTNKLQNFGPPGELCCREVP*ILATCGCQPLCSLNFLP*FVQVTGEFH*LFL*Q*SYLKEHVLLG*LHDHQ*VNFLIQVPQTNKITVISFRPPHHALHTCNL*KI*AGQKSPRVS*DICLNSSCPVRESSPERLCPSE*WDWLFAHSDEIAQSYPKA*DPLC
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Translated Frame:TWO : AQRILGVTDLR**QILFHI*IKTQPTDWSAWDNLCPSSVKFHQSYTKLSMLLS*LLASLQY*KGL*MFGRVEFCSFWPSCSWREDPAQS*LVIISNCSM*SSMGHQSHPFYQLHVRSMIPTSY*EAPMKLIGQLN*V*LKPQSWLILKVAAQ*S*KPETSQVVLETTPI*DQWSSH*IGC*QD*IMLLILTRKFSVILKTVGTFVSR*T*QKSTIVTSFTSKWARSLAYSKIRAWLVVKCLPY*KIPLGRTSAKETMSAPFILSFRVISNRSSVAGNC*TFSAGHCLMPQGLICLVVFVWKNGC*FQVN*NALETQLWQSAT*IMTQSSVTCLGFLISTKRQ*SLFRTKQSIGWTQ*LLLSIH*SLIIFL*RTGLKN**MFLTVITPNFGMSITQV*ICTPFQDVGLLKMVAT*MCLTSGMSGYWRVIILFRRSFQRSMRKGKIVHHSHWLTSVSGVHCFTQHQFSYTS*EFQPTDTLLVRAARSLIG*TGTQYVLVAFSNKKADP*DG*ERCEQWLLGGLHCCTPLGGCSNGGSX*A*RTTVESGSLKRTSIGSTLFGFSLVTDPESTALNIKQSKSAQCAFVVAGADPFFLLLMTIPLCLSHRCSNLFQTRSSKSRDCSAVSLTSTIFKSCLPCISKSLLISSAPCAVKTMDLGRLLIMLVMRPGRACSTSFSNIP*QYLLWSLKDFMSLGFL*QWMNFCDSGW*IANSTGSCGGPSMSIHVVSLTINDSTLLFT*ASTSGLSVDKSGAPPFRMGTGVLLGKLSNSTTVLSHALPLICDLDEM*GQPSPERHTL*SMFS*GFLCPGMALMNMFSLFLISKRVFIMVVNVDSSIFIVSSMLPPSIRQAPAFTAADKLRL*PDMLI*ESS*VITFREGCFSIKASKSLKLGYFAVYSNPRSVRA*TTSFRVSPPCSVIQEIVSAGIDPNWLIISDESLTSQTLTTPPVLANPGL*IPTSCRISDLLVSCVVERFPRYWPPVAVNLSVL*TFCLNLSKSLESSISSSFDNDPILRNMFFWVDFMTINESTSLFKSLKLTRSLSSLLDLLIMRCTLATFEKSKPDRRALASVRTSALTAVVQFESPLLRDCVHLNDGIGCSLIVMKLRRVIQKPRILCA
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Translated Frame:THREE : HRGS*ALLTCANNRYCFIFR*RPSQLIGQHGTTCVPLQ*NSINHTRSSQCCSRSC*HHCNIERGCECLEEWSFAAFGLLAPGGKILLSHNWSSSRTAACDLQWVINHTLFTSYM*DQ*YLLPTKRPL*S*LGS*IECN*NHSLG*S*RWQLNEAESRKHLRLSWRQPPSEISGLHIELVANRIRSCY*F*PENSL*S*RQWALSSPDELNRKALL*QVSHQNGQGLWRIQRSVHGWW*NVCHTKKYLLVEPVPRKPCQHHSSCPSE*FQTGPQ*QETVELFQLVIV*CHRG*YAWWFLSGKMDVDFK*TEMLWKHSCGKVQLKS*LRVL*HA*AF*FQQKGNSHSSEQNKASAGHSNYCYQFIDL**YSYEEQD*RIDRCSLL*LHQILVCQSHRSKSAHPSKMLAC*KW*LLECV*LQE*VDIGE*SSCFGDPFKGV*GKAKSYTTLTG*HLFLEYIVLHSINFPTPLENSNPQTHCW*GLPEAS*AKQALNMCLWPFQTRRQTLEMGKKGVNNGCLVASIAAPP*GGAAMEVLXEPREQLLNRVL*REHRLVVPFLVFHWSLTLKAQH*TSNSPKVHSVHLLWLVLILSSYF**LFPYVCHTDVQISSKQDLQRAVTVLRSV*HQQSSNPVFHAYQRAS*YHQHLAQ*KPWI*ADSLLCL**GQVVHVQHPSAISHDNIYFGP*KILCHWVFCSSG*IFVIQAGKLQTQQGHVAGLQCQSMLCH*PSTTLHFSSPEPPPQA*AWTRVGHHRSGWGLVFCLVNSQIPQLYCPMLSL*SVILMKCKASPHQRDTPYKVCFHKDSSVLVWH**TCFPSF*SPRGFL*WL*MWTPQSLLFPACCHHQSGKHRLSQQLIN*GCSLIC*FENPPE*LPLEKDASPSKHLSHLN*GILLCIATPDL*GPEPHHLEFPLPVQSYRKL*VLASIQIG*S*VMSL*RPRL*PPLQF*PTQVSEYQQVAEFRTSW*AVL*RGSLDTGHLWLSTSLFFELFALICPSHWRVPLALPLTMILS*GTCSFGLTS*PSMSQLPYSSPSN*QDHCHLF*TSSSCVAHLQPLKNLSRTEEPSRQLGHLP*QQLSSSRVLS*ETVSI*MMGLVVRS***NCAELSKSLGSSV
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Translated Frame:REVERSED_ONE : RTEDPRLLDNSAQFHHYERTTNPIIQMDTVSQERTLELDNCC*GRCPN*REGSSVRLRFFKGCKCATHDEEV*KR*Q*SC*FEGLE*GS*LIDGHEVNPKEHVP*DRIIVKGRANGTLQ*LGQIKAKSSKNREVDSHRWPVSREPLYNTAHQEVRNSATCWYSETWVG*NWRGGQSLGR*RLITYDQPIWIDASTHNFLYD*TGRGNSK*CGSGPHRSGVAIHSKIP*FK*LRCFDGEASFSKGNHSGGFSN*HIRLQP*FISCCESRCLPD*WWQHAGNNKD*GVHIHNHYKNPLGDQKEGKHVHQCHTRTEESL*KHTL*GVSLW*GLALHFIKITDQRESMGQYSCGI*EFTKQNTSPHPERWCPTLVHAQA*GGGSGEEKCRVVDGQ*HNMD*H*RPAT*PC*VCNLPA*ITKIHPLLQKTQ*HKIF*GPK*ILSWDIAEGC*TCTTWPHHKHNKESA*IHGFHCARC**Y*EAL*YAWKTGFEDC*CQTDRRTVTAL*RSCLEEI*TSV*QT*GNSH*K*EERISTSHNKCTLCTFGLFDVQCCAFRVSDQ*KTKKGTTNRCSL*RTRFNSCSLGSXRTSIAAPP*GGAAMEATKQPLFTPFLPISRVCLLV*KGHKHILSACLAYEASGSPHQQCVCGLEFSRGVGKLMLCKTMYSRNRCQPVRVVYDFAFPHTPLKGSPKQDDHSPISTHS*SQTHSSSYHF*QANILEGCADLDLCD*HTKIWCNYSKEHLSIL*SCSS*EYYQRSMN**Q*LLCPADALFCSEE*LLPFC*NQKA*ACHRTLSHDLSCTLPQLCFQSISVHLKSTSIFPDKNHQAYQPLWHQTMTS*KSSTVSCY*GPV*NYSEGQDEWC*HGFLGTGSTKRYFLVWQTFYHQPCTDL*IRQRPCPF*CETCHNSAFLLSSSGDESAHCL*DHREFSGQNQ*HDLILLATNSM*RPLISDGGCLQDNLRCFRLSASLSCHLQDQPRLWFQLHSIQLPNQLHRGLLVGSRYH*SYM*LVKRV*LMTH*RSHAAVRDDDQL*LSRIFPPGARRPKAAKLHSSKHSQPLSILQ*C*QLREQH*ELRV*LMEFH*RGTQVVPC*PISWLGLYLNMKQYLLLAQVSNA*DPLC
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Translated Frame:REVERSED_TWO : AQRILGFWITLRNFITMSEQPIPSFRWTQSLRRGLSNWTTAVKADVLTDARALLSGLDFSKVASVQRMMRRSKRDDSDLVSLRDLNKEVDSLMVMKSTQKNMFLKIGSLSKEELMELSSDLDKLRQKVQRTERLTATGGQYLGNLSTTQLTRRSEILQLVGIQRPGLARTGGVVKVWDVKDSSLMINQFGSMPALTISCMTEQGGETLNDVVQALTDLGLLYTAKYPNLSDLDALMEKHPSLKVITQEDSQINISGYNLSLSAAVKAGACLIDGGNMLETIKIEESTFTTIIKTLLEIKKRENMFISAIPGQRNPYENILYKVCLSGEGWPYISSRSQIKGRAWDNTVVEFESLPSKTPVPIRNGGAPLLSTLKPEVEAQVKRSVESLMVSDTTWIDIEGPPHDPVEFAIYQPESQKFIHCYRKPNDIKSFKDQSKYCHGILLKDVEHARPGLITSIIRSLPKSMVFTAQGADDIRRLFDMHGRQDLKIVDVKLTAEQSRLFEDLVWKRFEHLCDRHKGIVIKSKKKGSAPATTNAHCALLDCLMFSAVLSGSVTNEKPKRVLPIDVLFREPDSTVVL*AXREPPLLHPPRGVQQWRPPSNHCSHLSYPSQGSAFLFEKATSTY*VPV*PMRLRAALTNNVSVGWNSQEV*EN*CCVKQCTPETDVNQ*EWCTILPFLILL*KDLRNKMITLQYPLIPEVRHIQVATIFNKPTSWKGVQI*TCVIDIPKFGVITVRNIYQFFNPVLHKNIIRDQ*IDSSNYCVQPMLCFVLKSDYCLFVEIKKPKHVTEL*VMI*VALCHSCVSKAFQFT*NQHPFFQTKTTRHISPCGIRQ*PAEKVQQFPATEDLFEITLKDKMNGADMVSLALVRPRGIF*YGKHFTTSHARIFEYAKDLAHFDVKLVTIVLFC*VHLETKVPTVFKITENFRVRINNMI*SC*QPIQCEDH*SQMGVVSKTT*DVSGFQLH*AATFKINQDCGFSYTQFNCPISFIGAS**EVGIIDLTCNW*KGCD**PIEDHMLQFEMMTNYD*AGSSRQEQEGQKLQNSTLPNIHNPFQYCNDANSYESNIESFVYD*WNFTEEGHKLSHADQSVGWVFI*I*NSICY*RKSVTPRILCA
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Translated Frame:REVERSED_THREE : HRGS*AFG*LCAISSL*ANNQSHHSDGHSLSGEDSRTGQLLLRQMS*LTRGLFCPA*IFQRLQVCNA**GGLKEMTVILLV*GT*IRKLTH*WS*SQPKRTCSLR*DHCQRKS*WNSPVTWTN*GKKFKEQRG*QPQVASI*GTSLQHSSPGGPKFCNLLVFRDLGWLELEGWSKSGTLKTHHL*STNLDRCQHSQFPV*LNREGKL*MMWFRPSQIWGCYTQQNTLI*VT*ML*WRSILL*R*SLRRILKLTYQATTLVYQLL*KPVLA*LMVATCWKQ*RLRSPHSQPL*KPSWRSKRGKTCSSVPYQDRGILMKTYFIRCVSLVRAGLTFHQDHRSKGEHGTIQLWNLRVYQAKHQSPSGTVVPHSCPRSSLRWRLR*REV*SR*WSVTQHGLTLKARHMTLLSLQFTSLNHKNSSTATENPMT*NLLRTKVNIVMGYC*RMLNMHDLASSQA**GVCLNPWFSLRKVLMILGGSLICMEDRI*RLLMSN*PQNSHGSLKILFGRDLNICVTDIRE*SLKVRRKDQHQPQQMHTVHFWTV*CSVLCFQGQ*PMKNQKGYYQSMFSLENPIQQLFSRLXENLHCCTPLGGCSNGGHQATIVHTFLTHLKGLPSCLKRPQAHIECLFSL*GFGQPSPTMCLWVGILKRCRKIDAV*NNVLQKQMSTSESGVRFCLSSYSFERISETR*SLSNIHSFLKSDTFK*LPFLTSQHLGRVCRFRPV*LTYQNLV*LQ*GTSINSLILFFIRILSEINELIAVITVSSRCFVLF*RVTIAFLLKSKSLSMSQNSES*FKLHFATAVFPKHFSSLEINIHFSRQKPPGISAPVASDNDQLKKFNSFLLLRTCLKLL*RTR*MVLTWFPWHWFDQEVFFSMANILPPAMHGSLNTPKTLPILM*NLSQ*CFSVKFIWRRKCPLSLRSQRIFGSESIT*SNPVSNQFNVKTTDLRWGLSPRQPEMFPAFSFIELPPSRSTKTVVSVTLNSTAQSAS*GPLSRK*VSLILHVTGKKGVIDDPLKITCCSSR**PIMTEQDLPARSKKAKSCKTPLFQTFTTPFNIAMMLTATRATLRASCMIDGISLKRDTSCPMLTNQLAGSLSKYETVSVISASQ*RLGSSV
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```

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