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Commits on Sep 11, 2021

• Add line number to error reporting.

  heuermh

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  5b67960

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Commits on Feb 21, 2021

• Add copy ctr to FASTQ builder.

  heuermh

  committed
  579b40f

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Commits on Mar 1, 2017

• ABITrace support for quality score

  gwaldon

  committed
  5267d97

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Commits on Sep 25, 2015

• adding Fastq.convertTo(FastqVariant) and supporting methods

  heuermh

  committed
  4b99e41

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Commits on Oct 10, 2014

• updating guava dependency version to 18.0, fixes #21

  heuermh

  committed
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Commits on Aug 21, 2014

• adding static Fastq.builder() method

  heuermh

  committed
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Commits on Aug 6, 2014

• move parse and stream methods up to FastqReader interface to match biojava3

  heuermh

  committed
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Commits on Aug 5, 2014

• update guava to version 17.0, refactor methods that accept InputSupplier --> Readable

  heuermh

  committed
  27f041a

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Commits on Apr 25, 2013

• fixed a bug that caused a wrong offset when parsing SCF files

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  brandstaetter

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Commits on Apr 24, 2013

• Merge pull request #1 from brandstaetter/scf-fix

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  brandstaetter

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Commits on Apr 19, 2013

• removed another (now unnecessary) check

  brandstaetter

  committed
  840e099

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• remove commented out method

  heuermh

  committed
  bc8e81f

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• fixing possible exception when reading SCF files

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  brandstaetter

  committed
  4a95213

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Commits on Apr 15, 2013

• add null check to sequence and quality lengths match

  heuermh

  committed
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Commits on Apr 13, 2013

• adding quality method to fastq variant

  heuermh

  committed
  b3b429a

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Commits on Mar 28, 2012

• javadoc fixes, incorrect @param --> @throws

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  heuermh

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Commits on Mar 13, 2012

• refactor createQuality --> createQualityScores

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  heuermh

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Commits on Mar 12, 2012

• minor style fixes

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  heuermh

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Commits on Mar 9, 2012

• refactor qualityScores and errorProbabilites to return Iterable<Number> to match cookbook examples

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  heuermh

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  5b65f62

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• adding unit test for FastqTools, restricting createPhredSequence and createSymbolDistribution to Sanger variant only

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  heuermh

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• minor javadoc fixes

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  heuermh

  committed
  f0d3b1f

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• fix @since tags, version 1.9 --> 1.8.2

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  heuermh

  committed
  5bc775d

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• major performance improvements for FASTQ support; adding new low-level and event based parsers, adding FastqTools for common conversions, and adding compile scope dependency on guava version 11.0.1

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  heuermh

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  92a7894

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Commits on Nov 22, 2010

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  andreasprlic

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  3eed7e7

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