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Commits on Nov 2, 2020

• Remove use of '_' as identifier.

  heuermh

  committed
  048aa63

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Commits on Dec 28, 2016

• Throw IAE if databaseName is locuslink; NCBI LocusLink is no longer supported

  heuermh

  committed
  6dc38bb

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• Use HTTPS to access NCBI Entrez and QBLAST (#34)

  heuermh

  authored
  d97e861

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Commits on Apr 26, 2016

• Fix minor style issue with variable names

  heuermh

  committed
  2a1191f

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• Writing of chunknum & chunkleft

  gwaldon

  committed
  f2751f0

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Commits on Apr 21, 2016

• Editing of ChunkedSymbolList plus tests.

  gwaldon

  committed
  39c0545

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Commits on Dec 30, 2015

• style fixes and unit tests for Edit properties change

  heuermh

  committed
  32bf2df

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Commits on Dec 23, 2015

• Added new edit method with generic properties

  gwaldon

  committed
  e8b0424

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Commits on Mar 13, 2015

• changes for reading Ensembl Genbank files

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  brianrepko

  authored and

  heuermh

  committed
  95577ad

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Commits on Dec 22, 2014

• Change BLAST URL per http://www.ncbi.nlm.nih.gov/news/05-22-2014-BLAST-URL-domain-change/, fixes #24

  heuermh

  committed
  5284102

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Commits on Feb 20, 2014

• Fix synchronization of symbolAt method to prevent wrong symbol or null being returned in a multi-thread environment.

  gwaldon

  committed
  40514e9

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Commits on Jan 15, 2014

• Fix circularity in union method of SimpleRichLocation

  gwaldon

  committed
  55f6b98

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Commits on Jun 17, 2013

• UniprotFormat patch for handling newlines in OS (organism) field

  

  SFoote

  authored and

  SFoote

  committed
  f88c691

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Commits on Dec 4, 2012

• Fix array size and data during edit.

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  gwaldon

  committed
  2777be5

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Commits on Mar 9, 2012

• fix for bug uncovered by unit test for FastqTools

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  heuermh

  committed
  b389e58

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Commits on Feb 19, 2012

• Adjustment to Entrez update to EFetch 2.0

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  gwaldon

  committed
  ca7d5d5

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Commits on Dec 21, 2011

• Bug fix for one-ambiguous-symbol motif

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  gwaldon

  committed
  a8522a6

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Commits on Oct 4, 2011

• Added new constructor for RestrictionMapper using java.util.concurrent.ExecutorService

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  gwaldon

  committed
  ed80110

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Commits on Sep 14, 2011

• specifying all Date formats to either Locale.US or Locale.ENGLISH, to avoid Arabic months names induced problems

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  aalhossary

  committed
  21f083f

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Commits on Jun 7, 2011

• Some fixes for Division in EMBL and GenBank formats

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  gwaldon

  committed
  89a66fe

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Commits on Mar 20, 2011

• add some generics to biojavax

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  gwaldon

  committed
  98aeff1

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• Added generic for biojavax Note

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  gwaldon

  committed
  2190728

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Commits on Mar 18, 2011

• More fix with circularity

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  gwaldon

  committed
  3e1fc4b

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Commits on Mar 2, 2011

• Added circularity for locations

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  gwaldon

  committed
  6d6c4c1

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Commits on Mar 1, 2011

• Section parser now accepts tags not followed by white space.

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  gwaldon

  committed
  2a30e07

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Commits on Feb 27, 2011

• Fix ordering of sublocations on complementary strand

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  gwaldon

  committed
  4c82279

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Commits on Jan 27, 2011

• Fix modulateCircularLocation bug at junction (start = length) + test

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  gwaldon

  committed
  67ba038

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Commits on Jan 25, 2011

• Fix unexpected throwing of exception when invoking symbols(SymbolList seq) on circular locations

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  gwaldon

  committed
  693e107

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Commits on Nov 22, 2010

• moving to legacy project

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  andreasprlic

  committed
  95c6dee

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