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BioJava 5.3.0

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@josemduarte josemduarte released this 06 Sep 22:07
· 920 commits to master since this release

New features

  • Support for reading structures from binary cif format in structure module, thanks to CIFTools-java library. Thanks @JonStargaryen
  • Reading structures from mmCIF via new parser from CIFTools-java library. Much better read performance than existing parser. Both parsers still live alongside in BioJava 5.3.0, with default still being the BioJava native one.

Bug fixes

  • 8x performance increase in reading (non-gzipped) MMTF files thanks to mmtf-java dependency upgrade to 1.0.9
  • Bug fixes in MMTF file reading, #671 #850
  • Bug fix in OBO reading, where only one synonym was saved, #836
  • Bug fix in Genbank LOCUS line parsing #833
  • Bug fix in PDB file reading of MTRIX records #845
  • Bug fix in GenbankReader #800 #829
  • Dependencies and maven plugin upgrades