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Cif reader file parsing parameters fix #927

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Merged
josemduarte merged 1 commit into from
Apr 14, 2021
Merged

Cif reader file parsing parameters fix #927

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2 changes: 1 addition & 1 deletion biojava-structure/src/main/java/org/biojava/nbio/structure/URLIdentifier.java
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Original file line number Diff line number Diff line change
Expand Up @@ -153,7 +153,7 @@ public Structure loadStructure(AtomCache cache) throws StructureException, IOExc

switch(format) {
case CIF: case BCIF:
return CifStructureConverter.fromURL(url);
return CifStructureConverter.fromURL(url, cache.getFileParsingParams());
case MMTF:
return MmtfActions.readFromInputStream(url.openStream());
default: case PDB:
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2 changes: 1 addition & 1 deletion biojava-structure/src/main/java/org/biojava/nbio/structure/io/cif/CifStructureConverter.java
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Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,7 @@ public static Structure fromURL(URL url) throws IOException {
* @return the target
* @throws IOException thrown when reading fails
*/
private static Structure fromURL(URL url, FileParsingParameters parameters) throws IOException {
public static Structure fromURL(URL url, FileParsingParameters parameters) throws IOException {
return fromInputStream(url.openStream(), parameters);
}

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