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biojava / biojava Public

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Fork 397
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Improved ASA calculation performance#820

Merged

sbliven merged 11 commits intobiojava:masterbiojava/biojava:masterfrom

josemduarte:asaCalcPerformancejosemduarte/biojava:asaCalcPerformanceCopy head branch name to clipboard

Jan 3, 2019

Conversation Commits11 (11)Checks Files changed

Merged

Improved ASA calculation performance#820
sbliven merged 11 commits intobiojava:masterfrom
josemduarte:asaCalcPerformance

Commits

Commits on Jan 2, 2019

Neighbor indices now uses spatial hashing
josemduarte
committed
Supporting neighbors with and without SH
josemduarte
committed
A test, demoing that SH actually performs much worse
josemduarte
committed
Doing all neighbor indices upfront
josemduarte
committed
Efficient neighbor index finding with SH
josemduarte
committed
Tidying up
josemduarte
committed
Logging, docs and some minimal optimization
josemduarte
committed
Logging and cleanup
josemduarte
committed
Docs
josemduarte
committed

Commits on Jan 3, 2019

Docs
josemduarte
committed
Should be private
josemduarte
committed

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